Os01g0220400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0220400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.97 | 0.205 | 13.6 | 0.953 | 0.296 | 0.152 | -0.156 | -2.24 | 0.216 | 9.18 | 26.88 | 10427 | -- | -- |
| 23.16 | 0.226 | 13.5 | 1.76 | 0.283 | 0.0236 | -0.132 | -- | 0.487 | 8.99 | 26.74 | 32750 | -- | -- |
| 19.05 | 0.203 | 13.6 | 0.952 | 0.298 | 0.152 | -- | -2.25 | 0.217 | 9.1 | 26.9 | 10386 | -- | -- |
| 23.06 | 0.225 | 13.5 | 1.75 | 0.292 | 0.0556 | -- | -- | 0.468 | 8.57 | 25.6 | 37325 | -- | -- |
| 23.99 | 0.228 | 13.7 | 1.03 | -- | 0.0386 | -- | -2.08 | 0.223 | -- | 25.9 | 16033 | -- | -- |
| 23.2 | 0.226 | 13.5 | 1.77 | 0.286 | -- | -0.143 | -- | 0.492 | 9.21 | -- | -- | -- | -- |
| 23.27 | 0.226 | 13.5 | 1.76 | 0.288 | -- | -- | -- | 0.492 | 9.12 | -- | -- | -- | -- |
| 27.63 | 0.246 | 13.5 | 1.75 | -- | 0.0635 | -- | -- | 0.475 | -- | 25.9 | 16033 | -- | -- |
| 31.65 | 0.262 | 13.6 | -- | 0.291 | 1.37 | -- | -- | -0.0286 | 8.86 | 18.2 | 46414 | -- | -- |
| 28.05 | 0.247 | 13.5 | 1.76 | -- | -- | -- | -- | 0.493 | -- | -- | -- | -- | -- |
| 104.94 | 0.479 | 13.6 | -- | 0.291 | -- | -- | -- | 0.296 | 8.67 | -- | -- | -- | -- |
| 36.8 | 0.283 | 13.6 | -- | -- | 1.37 | -- | -- | -0.0214 | -- | 18.25 | 47520 | -- | -- |
| 109.72 | 0.489 | 13.6 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.85 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 7 | 18.97 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 8 | 18.97 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 10 | 19.00 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 19 | 19.06 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 20 | 19.06 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 22 | 19.07 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 25 | 19.08 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 27 | 19.08 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 34 | 19.09 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 35 | 19.09 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 68 | 19.14 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 81 | 19.15 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 88 | 19.15 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 14 |
| 140 | 19.20 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 191 | 19.23 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 219 | 19.25 | temperature | 25.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 226 | 19.25 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 266 | 19.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 312 | 19.29 | temperature | 25.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 314 | 19.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 327 | 19.29 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 412 | 19.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 413 | 19.32 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 15 |
| 425 | 19.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 449 | 19.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 539 | 19.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 545 | 19.35 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 549 | 19.35 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 556 | 19.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 659 | 19.37 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 703 | 19.37 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 733 | 19.38 | temperature | 20.0 | 14400 | > th | dose dependent | no | NA | NA |
| 776 | 19.38 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 22 |