Os01g0220300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0220300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.74 | 0.541 | 10.4 | -1.05 | 0.306 | 0.406 | 0.728 | -3.11 | -0.916 | 17.3 | 20.6 | 2537 | -- | -- |
| 144.12 | 0.559 | 10.3 | -0.564 | 0.311 | 1.24 | 0.999 | -- | -0.791 | 16.9 | 18.4 | 2403 | -- | -- |
| 134.05 | 0.539 | 10.4 | -1.07 | 0.309 | 0.411 | -- | -3.17 | -0.919 | 17.4 | 20.6 | 2533 | -- | -- |
| 146.65 | 0.564 | 10.3 | -0.564 | 0.306 | 1.24 | -- | -- | -0.783 | 17 | 18.5 | 2413 | -- | -- |
| 139.1 | 0.549 | 10.4 | -1.08 | -- | 0.398 | -- | -3.19 | -0.921 | -- | 20.7 | 2531 | -- | -- |
| 166.29 | 0.605 | 10.2 | 0.0143 | 0.263 | -- | 1.08 | -- | -0.549 | 17 | -- | -- | -- | -- |
| 168.92 | 0.609 | 10.2 | 0.0153 | 0.284 | -- | -- | -- | -0.544 | 18 | -- | -- | -- | -- |
| 152.03 | 0.574 | 10.3 | -0.533 | -- | 1.18 | -- | -- | -0.765 | -- | 18.5 | 2387 | -- | -- |
| 152.39 | 0.575 | 10.3 | -- | 0.319 | 0.938 | -- | -- | -0.673 | 17.3 | 18.38 | 2398 | -- | -- |
| 173.09 | 0.615 | 10.2 | 0.00695 | -- | -- | -- | -- | -0.551 | -- | -- | -- | -- | -- |
| 168.93 | 0.608 | 10.2 | -- | 0.283 | -- | -- | -- | -0.546 | 18 | -- | -- | -- | -- |
| 157.64 | 0.585 | 10.2 | -- | -- | 0.885 | -- | -- | -0.647 | -- | 18.4 | 2378 | -- | -- |
| 173.09 | 0.614 | 10.2 | -- | -- | -- | -- | -- | -0.552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.53 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 2 | 129.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 13 | 130.67 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 19 | 130.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 24 | 131.20 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 25 | 131.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 28 | 131.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 34 | 131.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 36 | 131.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 43 | 131.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 70 | 132.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 72 | 132.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 95 | 132.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 97 | 132.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 101 | 132.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 114 | 132.67 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 129 | 132.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 132 | 132.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 144 | 132.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 155 | 133.02 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 160 | 133.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 174 | 133.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 231 | 133.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 237 | 133.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 247 | 133.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 251 | 133.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 260 | 133.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 21 |
| 283 | 133.46 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 18 |
| 297 | 133.50 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 325 | 133.56 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 334 | 133.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 341 | 133.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 360 | 133.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 361 | 133.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 367 | 133.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 373 | 133.66 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 390 | 133.68 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 441 | 133.76 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 444 | 133.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 445 | 133.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 451 | 133.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 462 | 133.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 470 | 133.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 507 | 133.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 21 |
| 551 | 133.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 567 | 133.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 22 |
| 596 | 133.98 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 630 | 134.01 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 642 | 134.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 666 | 134.06 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 683 | 134.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 831 | 134.28 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 832 | 134.28 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 855 | 134.31 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 908 | 134.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 989 | 134.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |