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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0220100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cellulase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0207) R2 : 2.25e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00442 (0.0436) R2dN8 : 2.9e-05 R2N8 : 2.25e-05
σ : 0.39
deviance : 69.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.01 0.382 3.27 0.164 0.0959 0.26 0.273 1.15 -0.0308 8.66 90 5850 -- --
67.86 0.384 3.27 0.0869 0.106 0.296 0.256 -- -0.0589 8.79 91.53 5502 -- --
66.25 0.379 3.27 0.172 0.0962 0.257 -- 1.15 -0.0311 8.42 90 5854 -- --
68.07 0.384 3.27 0.093 0.137 0.288 -- -- -0.0562 8.2 105.8 5031 -- --
66.76 0.381 3.28 0.172 -- 0.258 -- 1.14 -0.0297 -- 89.86 5839 -- --
69.03 0.39 3.26 0.0718 0.0946 -- 0.269 -- 0.00366 8.53 -- -- -- --
69.26 0.39 3.26 0.08 0.095 -- -- -- 0.00346 8.23 -- -- -- --
68.63 0.386 3.27 0.0995 -- 0.287 -- -- -0.0553 -- 91 5759 -- --
68.29 0.385 3.27 -- 0.134 0.3 -- -- -0.0712 8.16 91 4998 -- --
69.76 0.39 3.26 0.0807 -- -- -- -- 0.00453 -- -- -- -- --
69.43 0.39 3.26 -- 0.0954 -- -- -- -0.00545 8.17 -- -- -- --
68.8 0.386 3.27 -- -- 0.299 -- -- -0.0534 -- 87.86 4341 -- --
69.93 0.39 3.26 -- -- -- -- -- -0.00442 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.81 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 62.96 atmosphere 1000.0 30 > th dose independent rect. 21 23
5 63.41 atmosphere 1005.0 90 > th dose dependent rect. 2 1
7 63.50 atmosphere 1005.0 10 > th dose dependent rect. 2 2
11 63.76 atmosphere 1010.0 30 < th dose dependent rect. 2 1
13 63.81 radiation 1.0 1440 < th dose dependent rect. 21 1
14 63.87 wind 1.0 30 < th dose dependent rect. 2 1
17 63.93 wind 3.0 10 < th dose independent rect. 2 1
24 63.98 temperature 15.0 10 > th dose independent rect. 3 23
27 64.00 temperature 10.0 10 > th dose independent rect. 2 1
29 64.00 temperature 25.0 10 < th dose independent rect. 2 1
31 64.00 humidity 50.0 10 > th dose independent rect. 2 1
34 64.00 atmosphere 995.0 10 > th dose independent rect. 2 1
35 64.00 atmosphere 1010.0 10 < th dose independent rect. 2 1
37 64.00 radiation 1.0 10 < th dose independent rect. 2 1
42 64.00 precipitation 0.1 10 < th dose independent rect. 2 1
44 64.00 radiation 1.0 10 < th dose dependent rect. 2 1
49 64.00 precipitation 0.1 10 < th dose dependent rect. 2 1
50 64.01 temperature 10.0 10 > th dose dependent rect. 2 1
51 64.01 humidity 50.0 10 > th dose dependent rect. 2 1
55 64.03 humidity 90.0 10 > th dose independent rect. 2 1
57 64.03 temperature 30.0 10 < th dose dependent rect. 2 1
59 64.03 humidity 90.0 30 > th dose dependent rect. 2 1
106 64.10 humidity 90.0 30 < th dose dependent rect. 20 1
109 64.11 radiation 1.0 43200 < th dose dependent rect. 3 1
114 64.14 wind 1.0 30 > th dose independent rect. 2 1
122 64.18 humidity 90.0 10 < th dose independent rect. 20 1
123 64.18 wind 9.0 30 < th dose independent rect. 3 23
131 64.24 atmosphere 1005.0 10 > th dose independent rect. 20 1
134 64.26 temperature 20.0 30 > th dose independent rect. 20 1
137 64.28 wind 5.0 30 < th dose independent rect. 20 1
140 64.29 wind 1.0 30 > th dose independent rect. 20 1
142 64.29 temperature 10.0 30 > th dose independent rect. 20 1
144 64.29 temperature 30.0 30 < th dose independent rect. 20 1
145 64.29 humidity 50.0 30 > th dose independent rect. 20 1
148 64.29 atmosphere 995.0 30 > th dose independent rect. 20 1
150 64.29 atmosphere 1010.0 30 < th dose independent rect. 20 1
152 64.29 radiation 1.0 30 < th dose independent rect. 20 1
157 64.29 precipitation 0.1 30 < th dose independent rect. 20 1
158 64.29 temperature 10.0 30 > th dose independent rect. 21 23
159 64.29 wind 7.0 30 < th dose dependent rect. 20 1
161 64.29 temperature 10.0 30 > th dose dependent rect. 20 1
162 64.29 atmosphere 995.0 30 > th dose dependent rect. 20 1
164 64.29 radiation 1.0 30 < th dose dependent rect. 20 1
169 64.29 precipitation 0.1 30 < th dose dependent rect. 20 1
170 64.30 temperature 10.0 1440 > th dose independent rect. 21 1
173 64.30 temperature 30.0 1440 < th dose independent rect. 21 1
177 64.30 humidity 50.0 1440 > th dose independent rect. 21 1
183 64.30 atmosphere 995.0 1440 > th dose independent rect. 21 1
184 64.30 radiation 1.0 1440 < th dose independent rect. 21 1
204 64.30 temperature 10.0 1440 > th dose independent rect. 22 23
209 64.30 atmosphere 1015.0 30 < th dose dependent rect. 20 1
211 64.31 wind 1.0 30 > th dose dependent rect. 20 1
219 64.34 temperature 30.0 30 < th dose dependent rect. 20 1
220 64.34 humidity 50.0 30 > th dose dependent rect. 20 1
268 64.43 precipitation 0.1 30 < th dose independent rect. 3 23
270 64.43 precipitation 0.1 30 < th dose dependent rect. 3 23
278 64.51 precipitation 0.1 30 < th dose independent rect. 21 23
282 64.51 precipitation 0.1 30 < th dose dependent rect. 21 23
305 64.63 wind 9.0 1440 < th dose independent rect. 3 1
306 64.63 temperature 10.0 1440 > th dose independent rect. 3 1
309 64.63 temperature 30.0 1440 < th dose independent rect. 3 1
313 64.63 humidity 50.0 1440 > th dose independent rect. 3 1
322 64.63 atmosphere 995.0 1440 > th dose independent rect. 3 1
323 64.63 radiation 1.0 1440 < th dose independent rect. 3 1
343 64.63 temperature 10.0 1440 > th dose independent rect. 4 23
356 64.66 wind 9.0 30 < th dose independent rect. 21 23
380 64.95 precipitation 0.1 1440 < th dose independent rect. 21 1
382 64.95 wind 1.0 10 > th dose independent rect. 21 23
383 64.95 precipitation 0.1 1440 < th dose dependent rect. 21 1
387 64.98 humidity 80.0 14400 < th dose dependent rect. 3 6
401 65.14 atmosphere 1000.0 720 > th dose independent rect. 21 8
404 65.17 humidity 90.0 90 < th dose independent rect. 2 1
428 65.26 wind 1.0 10 < th dose independent rect. 24 3
430 65.26 humidity 50.0 30 > th dose independent rect. 3 23
450 65.40 humidity 50.0 30 > th dose independent rect. 21 23
454 65.45 atmosphere 1000.0 720 > th dose independent rect. 3 8
456 65.46 humidity 70.0 14400 > th dose independent rect. 8 1
457 65.48 wind 1.0 14400 < th dose dependent rect. 6 1
461 65.54 humidity 80.0 14400 < th dose dependent rect. 23 11
472 65.61 humidity 70.0 14400 > th dose independent rect. 4 5
476 65.62 humidity 70.0 14400 > th dose independent rect. 1 8
484 65.65 humidity 70.0 14400 < th dose independent rect. 8 1
491 65.67 atmosphere 995.0 720 > th dose independent rect. 23 16
494 65.69 humidity 90.0 720 > th dose independent rect. 3 1
495 65.69 humidity 90.0 720 < th dose independent rect. 2 1
496 65.69 humidity 70.0 14400 < th dose independent rect. 6 4
514 65.72 temperature 10.0 720 > th dose independent rect. 15 8
515 65.72 temperature 10.0 720 > th dose independent rect. 23 16
522 65.73 precipitation 0.1 720 < th dose independent rect. 15 8
529 65.73 precipitation 0.1 720 < th dose dependent rect. 15 8
533 65.76 wind 1.0 10 < th dose independent rect. 6 21
538 65.78 precipitation 0.1 720 < th dose independent rect. 9 8
540 65.78 precipitation 0.1 720 < th dose dependent rect. 9 8
548 65.81 radiation 1.0 720 < th dose dependent rect. 21 8
549 65.82 radiation 40.0 720 < th dose independent rect. 15 8
567 65.87 wind 1.0 14400 < th dose dependent rect. 4 3
576 65.91 temperature 10.0 720 > th dose independent rect. 3 8
578 65.91 temperature 10.0 720 > th dose independent rect. 11 16
580 65.92 atmosphere 995.0 1440 > th dose independent rect. 3 12
581 65.92 wind 1.0 10 < th dose independent rect. 14 13
584 65.93 wind 1.0 14400 < th dose independent rect. 4 3
590 65.95 wind 1.0 14400 > th dose independent rect. 4 3
594 65.96 wind 9.0 720 < th dose independent rect. 3 8
595 65.96 wind 1.0 10 < th dose independent rect. 17 10
597 65.96 precipitation 0.1 720 < th dose independent rect. 5 16
602 65.96 precipitation 0.1 720 < th dose dependent rect. 5 16
604 65.97 atmosphere 1015.0 720 < th dose independent rect. 3 8
608 65.99 wind 1.0 10 < th dose independent rect. 21 6
611 65.99 radiation 1.0 720 < th dose independent rect. 21 8
617 66.00 humidity 60.0 14400 < th dose independent rect. 11 1
619 66.00 atmosphere 1010.0 90 < th dose dependent rect. 7 2
623 66.01 atmosphere 1000.0 10 > th dose independent rect. 2 12
632 66.04 radiation 10.0 10 > th dose independent rect. 7 1
658 66.07 wind 1.0 14400 < th dose independent rect. 6 1
685 66.10 temperature 10.0 720 > th dose independent rect. 9 8
686 66.10 atmosphere 1015.0 720 < th dose independent rect. 9 8
687 66.10 temperature 10.0 720 > th dose independent rect. 17 16
694 66.12 humidity 60.0 14400 < th dose dependent rect. 12 1
695 66.12 temperature 25.0 270 > th dose dependent rect. 3 5
701 66.15 temperature 10.0 720 > th dose independent rect. 21 8
702 66.15 temperature 30.0 720 < th dose independent rect. 21 8
703 66.15 humidity 50.0 720 > th dose independent rect. 21 8
710 66.15 temperature 10.0 720 > th dose independent rect. 5 16
718 66.17 humidity 60.0 4320 > th dose independent rect. 11 2
729 66.18 precipitation 0.1 720 < th dose independent rect. 11 16
731 66.18 precipitation 0.1 720 < th dose dependent rect. 11 16
742 66.20 humidity 50.0 4320 > th dose dependent rect. 11 2
745 66.20 humidity 80.0 4320 < th dose dependent rect. 11 4
748 66.21 humidity 80.0 4320 < th dose dependent rect. 14 1
760 66.23 humidity 80.0 720 > th dose dependent rect. 3 1
765 66.24 atmosphere 1000.0 720 > th dose independent rect. 3 6
766 66.24 humidity 50.0 14400 > th dose dependent rect. 8 1
774 66.25 atmosphere 1000.0 720 > th dose independent rect. 21 12
781 66.26 humidity 60.0 4320 < th dose dependent rect. 14 1
785 66.27 temperature 25.0 270 > th dose dependent rect. 6 1
800 66.29 atmosphere 995.0 720 > th dose independent rect. 7 8
801 66.29 precipitation 0.1 720 < th dose independent rect. 21 8
803 66.29 atmosphere 995.0 720 > th dose independent rect. 17 16
805 66.29 atmosphere 1010.0 10 < th dose dependent rect. 7 3
808 66.29 precipitation 0.1 720 < th dose dependent rect. 21 8
810 66.30 humidity 70.0 4320 > th dose independent rect. 8 5
819 66.30 humidity 90.0 4320 < th dose dependent rect. 4 12
821 66.31 temperature 25.0 270 > th dose independent rect. 6 1
824 66.31 humidity 70.0 4320 > th dose independent rect. 5 10
832 66.31 humidity 70.0 4320 > th dose independent rect. 20 19
842 66.32 humidity 70.0 4320 > th dose independent sin 5 NA
875 66.32 wind 1.0 14400 < th dose dependent rect. 2 6
881 66.33 atmosphere 995.0 720 > th dose independent rect. 9 8
893 66.33 humidity 50.0 4320 > th dose dependent rect. 3 12
923 66.34 humidity 90.0 4320 < th dose dependent rect. 23 17
927 66.35 atmosphere 1015.0 720 < th dose independent rect. 5 16
933 66.35 wind 1.0 14400 < th dose dependent rect. 4 7
950 66.36 wind 9.0 720 < th dose independent rect. 19 8
978 66.37 wind 9.0 720 < th dose independent rect. 15 8