Os01g0219600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0219600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 300.69 | 0.815 | 2.93 | 0.187 | 0.0638 | -0.526 | 0.235 | -0.254 | -0.0961 | 22.6 | 1010 | 396 | -- | -- |
| 300.9 | 0.808 | 2.93 | 0.204 | 0.0649 | -0.514 | 0.191 | -- | -0.092 | 22.5 | 1010 | 396 | -- | -- |
| 300.91 | 0.808 | 2.93 | 0.181 | 0.0639 | -0.53 | -- | -0.206 | -0.0961 | 23 | 1010 | 396 | -- | -- |
| 301.04 | 0.808 | 2.93 | 0.197 | 0.0633 | -0.519 | -- | -- | -0.0941 | 23 | 1010 | 396 | -- | -- |
| 301.15 | 0.808 | 2.93 | 0.18 | -- | -0.507 | -- | -0.208 | -0.0956 | -- | 1010 | 396 | -- | -- |
| 308.21 | 0.823 | 2.93 | 0.147 | 0.0252 | -- | -0.286 | -- | -0.0871 | 10.8 | -- | -- | -- | -- |
| 308.52 | 0.823 | 2.93 | 0.137 | 0.0374 | -- | -- | -- | -0.0873 | 14 | -- | -- | -- | -- |
| 301.29 | 0.808 | 2.93 | 0.196 | -- | -0.497 | -- | -- | -0.0922 | -- | 1010 | 396 | -- | -- |
| 302.06 | 0.809 | 2.94 | -- | 0.0636 | -0.488 | -- | -- | -0.117 | 23 | 1010 | 398 | -- | -- |
| 308.6 | 0.821 | 2.93 | 0.135 | -- | -- | -- | -- | -0.0881 | -- | -- | -- | -- | -- |
| 309.01 | 0.822 | 2.93 | -- | 0.0349 | -- | -- | -- | -0.102 | 13.9 | -- | -- | -- | -- |
| 302.29 | 0.81 | 2.93 | -- | -- | -0.476 | -- | -- | -0.113 | -- | 1010 | 396 | -- | -- |
| 309.08 | 0.821 | 2.93 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 291.80 | wind | 1.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 7 | 292.75 | wind | 1.0 | 90 | < th | dose dependent | rect. | 20 | 2 |
| 25 | 294.05 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 40 | 294.23 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 7 | 1 |
| 44 | 294.35 | wind | 1.0 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 60 | 294.73 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 61 | 294.74 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 4 |
| 77 | 295.06 | wind | 1.0 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 81 | 295.17 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 90 | 295.42 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 9 |
| 113 | 295.95 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 6 |
| 132 | 296.30 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 5 | 4 |
| 139 | 296.36 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 142 | 296.43 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 151 | 296.50 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 9 |
| 154 | 296.52 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 160 | 296.56 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 176 | 296.90 | wind | 7.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 189 | 296.96 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 215 | 297.12 | humidity | 70.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 217 | 297.14 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 219 | 297.15 | radiation | 20.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 224 | 297.19 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 225 | 297.19 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 226 | 297.22 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 238 | 297.29 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 241 | 297.29 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 243 | 297.29 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 244 | 297.29 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 245 | 297.29 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 258 | 297.40 | atmosphere | 1010.0 | 270 | < th | dose independent | sin | 4 | NA |
| 264 | 297.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 268 | 297.44 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 271 | 297.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 274 | 297.45 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 275 | 297.46 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 287 | 297.60 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 332 | 297.81 | atmosphere | 1005.0 | 30 | > th | dose dependent | sin | 23 | NA |
| 336 | 297.84 | atmosphere | 1010.0 | 270 | > th | dose independent | sin | 5 | NA |
| 341 | 297.88 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 343 | 297.90 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 385 | 298.02 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 435 | 298.06 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 467 | 298.14 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 491 | 298.23 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 12 |
| 499 | 298.24 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 502 | 298.25 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 9 | 13 |
| 621 | 298.30 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 626 | 298.31 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 20 | 17 |
| 628 | 298.32 | atmosphere | 1005.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 766 | 298.39 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 851 | 298.41 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 932 | 298.53 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 957 | 298.56 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 5 | 1 |