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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0219300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.043) R2 : 0.83
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.38 (0.166) R2dC : 0.172 R2C : 0.504
β3 : 2.8 (0.15) R2dE : 0.292 R2E : 0.631
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.6 (0.0907) R2dN8 : 0.0217 R2N8 : 0.0303
σ : 0.806
deviance : 299.17
__
_____
C
peak time of C : 4.53
E
wheather : radiation
threshold : 18.16
memory length : 252
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.04
open length of G : 7.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
285.75 0.794 4.87 -0.473 2.34 2.89 -1.85 0.16 0.54 4.41 19.2 258 1.05 7.24
285.67 0.787 4.87 -0.482 2.33 2.9 -1.74 -- 0.54 4.4 19.19 257 1.05 7.26
293.09 0.797 4.88 -0.453 2.39 2.88 -- -0.257 0.564 4.35 20 259 1.03 7.32
293.73 0.798 4.87 -0.462 2.33 2.88 -- -- 0.554 4.44 18.32 254 1.07 7.28
381.01 0.909 4.94 -0.625 -- 4.25 -- -1.23 0.395 -- 20 250 0.407 7.69
420.05 0.961 4.77 -0.339 4.95 -- -1.5 -- 0.71 5.51 -- -- -- --
425.56 0.966 4.76 -0.344 4.94 -- -- -- 0.717 5.53 -- -- -- --
383.68 0.912 4.93 -0.489 -- 4.27 -- -- 0.432 -- 18.5 244 0.393 7.87
299.17 0.806 4.85 -- 2.38 2.8 -- -- 0.6 4.53 18.16 252 1.04 7.3
1695.86 1.92 4.83 -0.181 -- -- -- -- 0.837 -- -- -- -- --
428.68 0.969 4.75 -- 4.94 -- -- -- 0.755 5.53 -- -- -- --
389.93 0.92 4.92 -- -- 4.24 -- -- 0.475 -- 18.26 243 0.365 7.88
1696.73 1.92 4.83 -- -- -- -- -- 0.857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.11 radiation 20.0 270 < th dose independent rect. 1 7
2 293.56 radiation 40.0 270 < th dose dependent rect. 1 7
5 295.10 precipitation 0.1 270 < th dose independent rect. 1 7
6 295.10 precipitation 0.1 270 < th dose dependent rect. 1 7
7 295.33 humidity 70.0 270 > th dose independent rect. 1 7
13 297.87 wind 7.0 270 < th dose independent rect. 1 7
15 297.98 temperature 10.0 270 > th dose independent rect. 1 7
17 297.98 temperature 30.0 270 < th dose independent rect. 1 7
18 297.98 humidity 50.0 270 > th dose independent rect. 1 7
20 297.98 atmosphere 995.0 270 > th dose independent rect. 1 7
21 297.98 atmosphere 1015.0 270 < th dose independent rect. 1 7
22 297.98 temperature 10.0 270 > th dose independent rect. 8 17
26 299.72 precipitation 0.1 270 < th dose independent rect. 13 18
27 299.72 precipitation 0.1 270 < th dose dependent rect. 13 18
28 299.76 wind 9.0 270 < th dose independent rect. 8 17
49 302.03 precipitation 0.1 270 < th dose independent rect. 12 9
50 302.03 precipitation 0.1 270 < th dose dependent rect. 12 9
58 302.76 wind 1.0 270 > th dose independent rect. 8 17
62 303.82 radiation 30.0 90 < th dose independent rect. 3 7
63 303.87 temperature 10.0 270 > th dose independent rect. 7 6
64 303.87 atmosphere 995.0 270 > th dose independent rect. 7 6
65 303.87 atmosphere 1015.0 270 < th dose independent rect. 7 6
66 303.87 temperature 10.0 270 > th dose independent rect. 12 9
67 303.87 temperature 10.0 270 > th dose independent rect. 21 15
68 303.87 atmosphere 995.0 270 > th dose independent rect. 21 15
69 303.87 temperature 10.0 270 > th dose independent rect. 13 18
70 303.93 wind 9.0 270 < th dose independent rect. 13 18
72 304.05 atmosphere 1015.0 270 < th dose independent rect. 12 9
73 304.10 precipitation 0.1 270 < th dose independent rect. 7 6
74 304.10 precipitation 0.1 270 < th dose dependent rect. 7 6
80 304.55 wind 9.0 270 < th dose independent rect. 12 8
81 304.59 temperature 15.0 270 > th dose independent rect. 18 8
83 304.70 radiation 40.0 270 < th dose independent rect. 13 18
84 304.80 wind 9.0 270 < th dose independent rect. 7 6
89 305.17 wind 9.0 270 < th dose independent rect. 21 15
102 305.57 precipitation 0.1 270 < th dose independent rect. 2 16
103 305.57 precipitation 0.1 270 < th dose dependent rect. 2 16
108 306.11 atmosphere 995.0 270 > th dose independent rect. 8 17
110 306.33 precipitation 0.1 270 < th dose independent rect. 8 17
111 306.33 precipitation 0.1 270 < th dose dependent rect. 8 17
119 306.57 wind 1.0 270 > th dose independent rect. 12 8
120 306.58 humidity 50.0 270 > th dose dependent rect. 1 7
121 306.61 temperature 15.0 270 > th dose independent rect. 2 16
124 306.71 temperature 10.0 270 > th dose dependent rect. 1 7
132 307.24 humidity 50.0 270 > th dose independent rect. 7 6
138 307.69 humidity 50.0 270 > th dose independent rect. 20 16
140 307.86 radiation 1.0 270 < th dose dependent rect. 18 8
144 308.14 radiation 1.0 270 < th dose independent rect. 18 8
162 308.58 wind 1.0 270 > th dose independent rect. 1 6
164 308.59 humidity 50.0 270 > th dose independent rect. 18 8
165 308.59 radiation 20.0 270 < th dose independent rect. 18 8
169 308.59 atmosphere 1015.0 270 < th dose independent rect. 2 16
171 308.67 wind 9.0 270 < th dose dependent rect. 1 6
174 308.73 wind 9.0 270 < th dose independent rect. 18 8
175 308.77 wind 9.0 270 < th dose independent rect. 2 16
178 308.82 atmosphere 995.0 270 > th dose independent rect. 18 8
200 309.92 precipitation 0.1 270 < th dose independent rect. 20 16
201 309.92 precipitation 0.1 270 < th dose dependent rect. 20 16
208 310.11 wind 1.0 270 > th dose independent rect. 18 8
217 310.35 wind 1.0 270 > th dose independent rect. 7 6
220 310.66 atmosphere 995.0 270 > th dose dependent rect. 1 6
222 310.73 humidity 50.0 270 > th dose independent rect. 7 18
224 311.05 humidity 50.0 90 > th dose dependent rect. 3 7
230 311.26 radiation 1.0 270 > th dose independent rect. 7 6
246 312.06 temperature 30.0 270 < th dose independent rect. 19 7
297 313.05 atmosphere 995.0 270 > th dose independent rect. 13 18
312 313.55 atmosphere 1015.0 270 < th dose independent rect. 13 18
334 314.39 precipitation 0.1 270 < th dose independent rect. 18 8
335 314.39 precipitation 0.1 270 < th dose dependent rect. 18 8
339 314.49 atmosphere 995.0 270 > th dose independent rect. 12 8
394 315.29 temperature 10.0 270 > th dose dependent rect. 20 5
416 315.64 temperature 10.0 270 > th dose dependent rect. 19 7
553 318.36 radiation 40.0 90 < th dose dependent rect. 15 18
650 319.98 temperature 15.0 10 > th dose independent rect. 11 16
660 320.27 atmosphere 995.0 270 > th dose independent rect. 2 16
663 320.33 atmosphere 1015.0 270 < th dose independent rect. 7 18
704 320.73 temperature 30.0 10 < th dose independent rect. 3 8
770 322.13 temperature 15.0 10 > th dose independent rect. 23 16
799 322.77 precipitation 0.1 10 < th dose independent rect. 3 8
800 322.77 precipitation 0.1 10 < th dose dependent rect. 3 8
814 323.15 radiation 40.0 10 < th dose dependent rect. 14 21
817 323.19 radiation 30.0 30 < th dose independent rect. 14 21
831 323.54 radiation 1.0 270 < th dose dependent rect. 7 19
840 323.58 atmosphere 1015.0 270 < th dose dependent rect. 12 8
867 324.05 radiation 40.0 10 < th dose dependent rect. 3 8
913 324.36 radiation 40.0 270 < th dose independent rect. 12 8
914 324.38 radiation 40.0 90 < th dose independent rect. 3 17
922 324.52 atmosphere 1015.0 270 < th dose dependent rect. 13 6
938 324.77 radiation 40.0 90 < th dose independent rect. 13 10
953 325.04 temperature 10.0 270 > th dose dependent rect. 3 3
991 325.51 wind 9.0 10 < th dose independent rect. 3 8