Os01g0219000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0219000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.47 | 0.526 | 7.28 | 2.7 | 1.36 | -1.29 | 0.105 | 2.87 | 0.644 | 17.7 | 23.89 | 1241 | -- | -- |
| 128.86 | 0.529 | 7.39 | 1.91 | 1.43 | -1.11 | 0.0121 | -- | 0.378 | 17.9 | 24.99 | 1153 | -- | -- |
| 125.49 | 0.522 | 7.27 | 2.72 | 1.36 | -1.3 | -- | 2.94 | 0.643 | 17.7 | 23.97 | 1240 | -- | -- |
| 128.03 | 0.527 | 7.41 | 1.84 | 1.4 | -0.97 | -- | -- | 0.27 | 17.7 | 27 | 1168 | -- | -- |
| 220.62 | 0.692 | 7.27 | 2.63 | -- | -1.43 | -- | 2.56 | 0.603 | -- | 24 | 1267 | -- | -- |
| 163.97 | 0.6 | 7.41 | 1.6 | 1.46 | -- | 0.213 | -- | 0.267 | 17.2 | -- | -- | -- | -- |
| 164.08 | 0.6 | 7.41 | 1.6 | 1.46 | -- | -- | -- | 0.268 | 17.2 | -- | -- | -- | -- |
| 224.38 | 0.698 | 7.35 | 1.94 | -- | -1.19 | -- | -- | 0.419 | -- | 24.1 | 1265 | -- | -- |
| 212.71 | 0.679 | 7.47 | -- | 1.41 | -0.67 | -- | -- | -0.0509 | 17.6 | 31.42 | 1032 | -- | -- |
| 275.1 | 0.775 | 7.39 | 1.55 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 231.62 | 0.712 | 7.45 | -- | 1.43 | -- | -- | -- | 0.0894 | 17.3 | -- | -- | -- | -- |
| 312.14 | 0.823 | 7.46 | -- | -- | -0.703 | -- | -- | -0.0823 | -- | 32.62 | 1135 | -- | -- |
| 338.47 | 0.859 | 7.43 | -- | -- | -- | -- | -- | 0.0592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 24 | 124.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 78 | 125.17 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 181 | 127.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 21 |
| 238 | 127.98 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 292 | 128.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 354 | 128.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 432 | 129.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 487 | 130.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 557 | 131.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 567 | 131.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 616 | 131.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 694 | 132.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 695 | 132.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 696 | 132.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 709 | 132.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 723 | 132.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 724 | 132.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 738 | 132.16 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 781 | 132.26 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 883 | 132.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 984 | 132.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |