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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0217000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.049) R2 : 0.176
β1 : -1.31 (0.18) R2dD : 0.0992 R2D : 0.0812
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.704 (0.109) R2dE : 0.0758 R2E : 0.0722
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.295 (0.105) R2dN8 : 0.0193 R2N8 : 0.000102
σ : 0.918
deviance : 388.14
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 26.88
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
372.98 0.907 4.01 -1.33 0.851 1.33 1.79 0.671 -0.29 11.9 23.12 10 -- --
373.46 0.9 4.01 -1.34 0.856 1.34 1.14 -- -0.292 11.8 22.86 9 -- --
377.32 0.905 4.01 -1.31 0.764 1.31 -- -0.765 -0.237 11.4 24.31 15 -- --
378.77 0.906 4.01 -1.29 0.81 1.29 -- -- -0.287 11.4 22.89 9 -- --
385.5 0.914 4.03 -1.33 -- 0.714 -- -0.751 -0.298 -- 27 9 -- --
403.28 0.941 4.04 -1.37 0.488 -- -1.21 -- -0.311 1.49 -- -- -- --
408.98 0.947 4.04 -1.33 0.489 -- -- -- -0.303 0.971 -- -- -- --
388.14 0.918 4.03 -1.31 -- 0.704 -- -- -0.295 -- 26.88 9 -- --
422.26 0.957 3.98 -- 0.883 1.36 -- -- -0.143 11.6 23.13 9 -- --
423.84 0.962 4.03 -1.31 -- -- -- -- -0.294 -- -- -- -- --
455.67 0.999 4 -- 0.467 -- -- -- -0.155 0.849 -- -- -- --
433.2 0.969 3.99 -- -- 0.709 -- -- -0.151 -- 27.04 9 -- --
469.29 1.01 3.99 -- -- -- -- -- -0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 361.18 radiation 20.0 10 < th dose dependent rect. 4 16
3 362.72 temperature 30.0 720 < th dose independent rect. 18 8
5 364.00 humidity 80.0 720 < th dose dependent rect. 17 14
8 364.38 radiation 20.0 10 < th dose independent rect. 4 16
28 366.03 radiation 10.0 10 < th dose dependent sin 23 NA
29 366.08 humidity 80.0 720 < th dose dependent rect. 17 2
36 366.69 atmosphere 1005.0 90 > th dose independent rect. 3 6
60 367.40 atmosphere 1000.0 90 > th dose dependent rect. 3 6
62 367.45 atmosphere 1000.0 90 > th dose independent rect. 3 17
66 367.57 temperature 20.0 90 < th dose independent rect. 7 13
67 367.61 atmosphere 1000.0 10 > th dose independent rect. 4 16
71 367.84 humidity 80.0 90 > th dose independent rect. 19 8
74 367.93 humidity 70.0 720 < th dose independent rect. 17 14
80 368.13 humidity 70.0 720 < th dose independent rect. 17 3
96 368.34 temperature 30.0 720 > th dose dependent rect. 17 16
100 368.43 temperature 30.0 720 > th dose dependent rect. 17 2
119 368.58 temperature 30.0 720 > th dose independent rect. 17 2
127 368.58 radiation 10.0 30 > th dose independent rect. 9 9
151 368.71 radiation 20.0 10 < th dose dependent rect. 6 14
154 368.79 humidity 70.0 720 > th dose independent rect. 18 8
157 368.88 precipitation 0.1 90 < th dose independent rect. 3 17
158 368.88 precipitation 0.1 90 < th dose dependent rect. 3 17
210 369.91 radiation 30.0 90 < th dose dependent rect. 12 22
229 370.01 radiation 10.0 30 < th dose independent rect. 7 13
240 370.14 atmosphere 995.0 10 > th dose dependent rect. 4 16
243 370.21 radiation 10.0 10 > th dose independent rect. 9 23
244 370.22 temperature 15.0 90 > th dose independent rect. 3 17
246 370.22 humidity 60.0 90 > th dose dependent rect. 19 8
252 370.33 atmosphere 995.0 270 > th dose dependent rect. 24 8
270 370.56 radiation 20.0 10 < th dose dependent rect. 3 23
273 370.62 temperature 20.0 30 < th dose dependent rect. 7 14
276 370.65 radiation 30.0 10 < th dose dependent rect. 13 22
284 370.75 radiation 10.0 30 < th dose independent sin 23 NA
309 370.91 radiation 10.0 30 > th dose independent sin 22 NA
310 370.97 atmosphere 995.0 90 > th dose dependent rect. 3 17
314 371.01 precipitation 0.1 90 < th dose independent rect. 20 7
315 371.01 precipitation 0.1 90 < th dose dependent rect. 20 7
366 371.37 humidity 80.0 720 < th dose dependent sin 12 NA
373 371.41 temperature 10.0 90 > th dose independent rect. 20 7
374 371.41 temperature 30.0 90 < th dose independent rect. 20 7
375 371.41 humidity 50.0 90 > th dose independent rect. 20 7
378 371.41 atmosphere 995.0 90 > th dose independent rect. 20 7
379 371.41 radiation 1.0 90 < th dose independent rect. 20 7
385 371.41 atmosphere 1015.0 90 < th dose independent rect. 3 17
386 371.41 radiation 1.0 90 < th dose dependent rect. 20 7
420 371.54 wind 9.0 90 < th dose independent rect. 20 7
480 371.85 humidity 60.0 1440 > th dose independent rect. 16 3
487 371.90 radiation 20.0 30 < th dose dependent rect. 13 7
508 371.94 wind 9.0 90 < th dose independent rect. 3 17
510 371.98 humidity 60.0 1440 > th dose independent rect. 16 12
529 372.00 humidity 60.0 1440 > th dose independent rect. 16 15
534 372.02 wind 9.0 90 < th dose dependent rect. 20 7
596 372.28 humidity 60.0 10 > th dose independent rect. 4 16
647 372.48 radiation 40.0 90 < th dose dependent rect. 16 17
670 372.61 radiation 20.0 10 < th dose dependent rect. 16 23
673 372.63 temperature 10.0 10 > th dose independent rect. 20 8
674 372.63 temperature 30.0 10 < th dose independent rect. 20 8
675 372.63 humidity 50.0 10 > th dose independent rect. 20 8
678 372.63 atmosphere 995.0 10 > th dose independent rect. 20 8
679 372.63 radiation 1.0 10 < th dose independent rect. 20 8
684 372.63 temperature 10.0 10 > th dose independent rect. 4 16
686 372.63 atmosphere 1015.0 10 < th dose independent rect. 4 16
687 372.63 radiation 1.0 10 < th dose dependent rect. 20 8
695 372.65 atmosphere 1005.0 270 > th dose independent rect. 1 6
707 372.74 temperature 20.0 90 > th dose independent rect. 7 10
711 372.75 wind 9.0 10 < th dose independent rect. 20 8
732 372.80 humidity 70.0 720 < th dose independent sin 11 NA
751 372.84 radiation 20.0 90 < th dose independent rect. 12 21
778 373.06 wind 1.0 270 > th dose independent rect. 2 17
795 373.20 temperature 30.0 720 < th dose independent rect. 18 1
796 373.21 humidity 70.0 1440 > th dose independent rect. 18 1
807 373.27 radiation 10.0 30 > th dose independent rect. 7 11
824 373.29 humidity 50.0 1440 > th dose independent sin 12 NA
825 373.29 humidity 50.0 1440 < th dose independent sin 12 NA
884 373.51 radiation 30.0 90 < th dose independent rect. 3 7
896 373.58 radiation 30.0 10 < th dose dependent rect. 16 18
994 373.85 radiation 20.0 90 < th dose independent rect. 12 8
995 373.85 humidity 60.0 1440 < th dose dependent sin 12 NA