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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0216000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.53 (--) R2 : -9.3
β1 : 6.66 (--) R2dD : -3.49 R2D : -11.3
β2 : 0.293 (--) R2dC : -0.00509 R2C : -7.22
β3 : 90.2 (--) R2dE : 24.4 R2E : -29.9
β4 : 0.398 (--) R2dD*C : -0.0088 R2D*C : -7.2
β5 : 269 (--) R2dD*E : 23.4 R2D*E : -29.3
γ1 : -0.175 (--) R2dN8 : 0.176 R2N8 : -6.96
σ : 0.784
deviance : 278.25
__
_____
C
peak time of C : 12.3
E
wheather : radiation
threshold : 1
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
278.25 0.784 5.53 6.66 0.293 90.2 0.398 269 -0.175 12.3 1 7 11 1
325.41 0.847 3.25 -0.615 0.107 0.856 -1.9 -- -0.276 5.53 0.01356 104 10.5 1.78
410.45 0.944 4.46 4.54 0.0988 89.6 -- 273 -0.308 19.1 4.009 751 11.2 0.957
325.86 0.841 3.25 -0.592 0.108 0.591 -- -- -0.266 5.72 26.2 154 10.8 2.04
313.35 0.824 4.96 4.46 -- 91.4 -- 273 -0.179 -- 3.706 1080 11.2 0.917
326.13 0.847 3.25 -0.625 0.115 -- -1.89 -- -0.28 5.64 -- -- -- --
329.38 0.85 3.24 -0.626 0.316 -- -- -- -0.269 10.3 -- -- -- --
324.3 0.839 3.23 -0.642 -- 0.538 -- -- -0.223 -- 59.23 97 10.9 1.97
334.61 0.852 3.23 -- 0.153 0.528 -- -- -0.14 5.55 34.75 106 11 2.23
335.46 0.856 3.25 -0.631 -- -- -- -- -0.269 -- -- -- -- --
339.71 0.862 3.23 -- 0.32 -- -- -- -0.199 10.4 -- -- -- --
335.02 0.852 3.24 -- -- 0.545 -- -- -0.162 -- 58.01 97 10.9 2.15
345.96 0.868 3.24 -- -- -- -- -- -0.199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 278.25 radiation 1.0 1440 < th dose independent rect. 11 1
2 278.25 radiation 1.0 1440 < th dose dependent rect. 11 1
3 289.13 radiation 1.0 1440 < th dose independent rect. 11 4
4 289.13 radiation 1.0 1440 < th dose dependent rect. 11 4
38 290.24 precipitation 0.1 270 > th dose independent rect. 2 1
39 290.24 precipitation 0.1 270 > th dose dependent rect. 2 1
47 290.86 radiation 1.0 1440 > th dose independent rect. 13 2
48 291.44 radiation 1.0 1440 > th dose independent rect. 11 1
55 293.00 radiation 1.0 1440 > th dose independent rect. 9 6
58 293.35 radiation 1.0 1440 > th dose independent rect. 11 4
61 293.77 humidity 60.0 14400 > th dose independent rect. 22 10
64 293.89 atmosphere 1005.0 10 < th dose dependent rect. 2 7
65 293.92 humidity 90.0 720 > th dose dependent rect. 20 1
67 294.35 humidity 60.0 14400 > th dose independent rect. 2 6
68 294.47 humidity 60.0 14400 > th dose independent rect. 24 8
69 294.61 humidity 60.0 14400 > th dose independent rect. 6 2
81 295.62 atmosphere 1005.0 90 < th dose dependent rect. 3 5
82 295.67 radiation 1.0 1440 > th dose independent rect. 9 3
116 298.21 radiation 1.0 1440 > th dose independent rect. 9 1
117 298.25 humidity 90.0 90 > th dose independent rect. 7 3
120 298.49 humidity 90.0 10 > th dose independent rect. 6 4
123 298.62 humidity 90.0 10 > th dose independent rect. 6 2
126 298.77 humidity 60.0 14400 < th dose independent rect. 6 1
128 298.77 humidity 60.0 14400 < th dose independent rect. 20 1
130 298.77 radiation 20.0 14400 > th dose independent rect. 17 1
181 298.77 humidity 60.0 14400 < th dose dependent rect. 6 1
183 298.77 humidity 60.0 14400 < th dose dependent rect. 20 1
185 298.77 radiation 20.0 14400 > th dose dependent rect. 17 1
243 299.29 wind 3.0 720 < th dose independent rect. 21 2
256 300.07 radiation 1.0 14400 < th dose dependent rect. 9 1
279 300.85 humidity 90.0 10 > th dose independent sin 2 NA
286 301.04 wind 3.0 720 > th dose independent rect. 21 1
296 301.08 humidity 90.0 10 > th dose independent rect. 2 12
301 301.14 radiation 40.0 14400 < th dose independent rect. 16 9
305 301.19 humidity 90.0 10 > th dose independent rect. 2 8
311 301.27 radiation 40.0 14400 < th dose independent rect. 16 11
314 301.34 humidity 90.0 90 > th dose dependent rect. 6 1
319 301.46 humidity 90.0 10 > th dose dependent rect. 6 12
320 301.47 humidity 90.0 10 > th dose dependent rect. 6 8
327 301.54 wind 5.0 720 < th dose dependent rect. 21 2
329 301.59 wind 3.0 720 > th dose independent rect. 17 6
331 301.68 radiation 1.0 14400 > th dose independent rect. 8 2
332 301.69 radiation 1.0 14400 < th dose independent rect. 8 2
336 301.87 temperature 25.0 1440 > th dose independent rect. 11 1
339 302.02 radiation 40.0 14400 < th dose independent rect. 16 4
344 302.10 wind 3.0 720 < th dose independent rect. 17 6
345 302.16 humidity 90.0 90 > th dose dependent rect. 6 3
348 302.19 temperature 15.0 14400 > th dose independent rect. 9 2
369 302.55 radiation 40.0 14400 < th dose independent rect. 16 15
374 302.71 humidity 90.0 10 > th dose dependent rect. 6 2
375 302.72 temperature 15.0 14400 < th dose independent rect. 9 2
378 302.81 humidity 90.0 10 > th dose dependent rect. 6 4
389 302.98 humidity 90.0 10 > th dose independent rect. 6 12
396 303.08 humidity 90.0 10 > th dose independent rect. 6 8
403 303.15 wind 5.0 720 < th dose dependent rect. 16 7
419 303.38 humidity 80.0 10 > th dose dependent rect. 8 1
472 303.93 temperature 25.0 1440 < th dose independent rect. 11 1
475 303.96 humidity 90.0 90 > th dose independent rect. 3 7
504 304.30 temperature 25.0 10 < th dose independent rect. 24 9
511 304.36 temperature 20.0 90 > th dose dependent rect. 13 20
513 304.40 temperature 15.0 14400 < th dose dependent rect. 4 1
516 304.46 radiation 1.0 1440 < th dose dependent rect. 3 13
518 304.47 radiation 1.0 1440 < th dose dependent rect. 1 15
523 304.51 radiation 40.0 14400 < th dose independent rect. 16 2
530 304.61 radiation 1.0 1440 > th dose independent rect. 11 19
531 304.62 radiation 1.0 1440 < th dose dependent rect. 23 17
532 304.62 radiation 1.0 1440 < th dose dependent rect. 21 19
534 304.63 radiation 1.0 1440 < th dose independent rect. 11 19
552 304.81 humidity 90.0 10 < th dose independent rect. 6 8
567 304.93 radiation 1.0 1440 < th dose dependent rect. 11 11
570 304.95 radiation 1.0 1440 < th dose dependent rect. 11 13
593 305.04 radiation 1.0 1440 < th dose dependent rect. 11 17
614 305.12 humidity 90.0 10 < th dose independent rect. 6 6
615 305.12 humidity 90.0 10 < th dose independent rect. 6 14
638 305.29 temperature 20.0 10 > th dose dependent rect. 14 21
645 305.36 radiation 1.0 1440 < th dose independent rect. 11 11
651 305.37 radiation 1.0 1440 < th dose independent rect. 11 13
657 305.39 radiation 1.0 1440 < th dose dependent sin 23 NA
658 305.40 humidity 90.0 720 > th dose dependent rect. 20 7
661 305.40 temperature 20.0 10 > th dose dependent rect. 14 19
669 305.44 humidity 80.0 1440 > th dose independent rect. 12 1
745 305.75 atmosphere 1005.0 10 > th dose independent rect. 11 2
765 305.87 humidity 80.0 1440 > th dose dependent rect. 12 1
777 305.91 temperature 15.0 14400 < th dose dependent rect. 23 1
779 305.91 temperature 15.0 90 > th dose dependent rect. 13 12
828 306.06 radiation 10.0 4320 < th dose dependent rect. 22 7
881 306.14 temperature 20.0 10 > th dose dependent rect. 14 17
885 306.17 temperature 15.0 14400 < th dose dependent rect. 23 7
886 306.17 temperature 15.0 14400 < th dose dependent rect. 23 9
887 306.17 temperature 15.0 14400 < th dose dependent rect. 23 11
900 306.21 radiation 20.0 14400 < th dose independent rect. 17 13
914 306.25 radiation 1.0 1440 < th dose independent sin 22 NA
920 306.26 temperature 15.0 10 > th dose dependent sin 14 NA
927 306.27 temperature 25.0 90 < th dose dependent rect. 24 8
932 306.28 temperature 15.0 14400 < th dose dependent sin 7 NA
977 306.38 radiation 1.0 1440 > th dose independent sin 22 NA
981 306.38 humidity 90.0 90 > th dose dependent sin 2 NA
994 306.42 temperature 15.0 14400 < th dose independent rect. 5 7