Os01g0214400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0214400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.85 | 0.225 | 12 | -0.131 | 0.149 | 0.235 | -1.16 | -0.529 | -0.178 | 18.6 | 12.52 | 10 | -- | -- |
| 23.47 | 0.226 | 12 | -0.122 | 0.127 | 0.215 | -1.18 | -- | -0.179 | 17.2 | 16.1 | 10 | -- | -- |
| 26.05 | 0.238 | 12 | -0.105 | 0.126 | 0.234 | -- | -0.39 | -0.183 | 18.6 | 16.12 | 16 | -- | -- |
| 26.66 | 0.24 | 12 | -0.128 | 0.14 | 0.261 | -- | -- | -0.177 | 19.5 | 17.78 | 11 | -- | -- |
| 27.02 | 0.242 | 12 | -0.113 | -- | 0.235 | -- | -0.381 | -0.182 | -- | 16.1 | 16 | -- | -- |
| 26.66 | 0.242 | 12 | -0.102 | 0.225 | -- | -1.03 | -- | -0.175 | 16.1 | -- | -- | -- | -- |
| 29.24 | 0.253 | 12 | -0.113 | 0.228 | -- | -- | -- | -0.181 | 14.6 | -- | -- | -- | -- |
| 27.64 | 0.245 | 12 | -0.13 | -- | 0.235 | -- | -- | -0.18 | -- | 17.76 | 10 | -- | -- |
| 27.09 | 0.242 | 12 | -- | 0.144 | 0.268 | -- | -- | -0.164 | 19.5 | 17.71 | 11 | -- | -- |
| 32.28 | 0.266 | 12 | -0.123 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 29.58 | 0.254 | 12 | -- | 0.23 | -- | -- | -- | -0.168 | 14.6 | -- | -- | -- | -- |
| 28.09 | 0.247 | 12 | -- | -- | 0.232 | -- | -- | -0.168 | -- | 17.78 | 10 | -- | -- |
| 32.68 | 0.267 | 12 | -- | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 12 | 21.94 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 7 |
| 13 | 21.99 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 16 |
| 14 | 21.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 18 | 22.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 46 | 22.25 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 15 |
| 60 | 22.33 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 68 | 22.40 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 9 |
| 74 | 22.43 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 75 | 22.43 | humidity | 80.0 | 10 | < th | dose independent | rect. | 23 | 17 |
| 87 | 22.45 | humidity | 80.0 | 10 | < th | dose independent | rect. | 3 | 13 |
| 97 | 22.47 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 135 | 22.55 | radiation | 10.0 | 10 | > th | dose independent | rect. | 7 | 9 |
| 146 | 22.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 148 | 22.57 | wind | 7.0 | 10 | < th | dose independent | rect. | 23 | 16 |
| 159 | 22.60 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 22 |
| 163 | 22.62 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 8 |
| 199 | 22.67 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 7 |
| 200 | 22.67 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 22 |
| 202 | 22.67 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 213 | 22.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 221 | 22.70 | radiation | 30.0 | 30 | < th | dose independent | rect. | 13 | 10 |
| 228 | 22.72 | radiation | 10.0 | 10 | > th | dose independent | sin | 0 | NA |
| 235 | 22.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 17 |
| 237 | 22.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 17 |
| 248 | 22.74 | wind | 9.0 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 262 | 22.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 266 | 22.75 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 268 | 22.76 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 282 | 22.78 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 289 | 22.79 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 290 | 22.79 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 8 |
| 309 | 22.80 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 366 | 22.83 | radiation | 20.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 367 | 22.83 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 369 | 22.84 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 370 | 22.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 6 |
| 381 | 22.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 391 | 22.85 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 415 | 22.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 416 | 22.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 436 | 22.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 448 | 22.90 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 7 |
| 456 | 22.90 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 7 |
| 487 | 22.92 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 492 | 22.92 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 20 |
| 497 | 22.93 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 8 |
| 500 | 22.93 | radiation | 20.0 | 30 | < th | dose independent | rect. | 13 | 22 |
| 514 | 22.95 | radiation | 10.0 | 10 | > th | dose independent | no | NA | NA |
| 620 | 22.97 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 623 | 22.98 | wind | 1.0 | 90 | > th | dose independent | rect. | 15 | 7 |
| 625 | 22.98 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 7 |
| 630 | 22.98 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 22 | 17 |
| 635 | 22.98 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 22 | 17 |
| 637 | 22.99 | temperature | 20.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 648 | 22.99 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 20 |
| 654 | 22.99 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 667 | 23.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 670 | 23.00 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 678 | 23.00 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 700 | 23.02 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 718 | 23.03 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 725 | 23.04 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 16 |
| 729 | 23.04 | temperature | 15.0 | 30 | > th | dose dependent | sin | 14 | NA |
| 730 | 23.04 | radiation | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 739 | 23.05 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 7 |
| 741 | 23.05 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 7 |
| 749 | 23.05 | temperature | 10.0 | 90 | > th | dose independent | rect. | 22 | 17 |
| 757 | 23.06 | radiation | 1.0 | 270 | > th | dose independent | sin | 15 | NA |
| 765 | 23.06 | radiation | 20.0 | 30 | < th | dose independent | rect. | 16 | 18 |
| 785 | 23.07 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 22 | 17 |
| 787 | 23.07 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 799 | 23.08 | humidity | 90.0 | 90 | < th | dose independent | rect. | 15 | 7 |
| 803 | 23.08 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 16 |
| 821 | 23.09 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 7 |
| 855 | 23.10 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 882 | 23.12 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 889 | 23.12 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 895 | 23.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 896 | 23.12 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 10 |
| 943 | 23.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 946 | 23.14 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 8 |
| 979 | 23.15 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 998 | 23.16 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |