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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0212500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0169) R2 : 3.23e-08
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000137 (0.0357) R2dN8 : 4.17e-08 R2N8 : 3.23e-08
σ : 0.319
deviance : 46.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.3 0.313 3.11 0.124 0.197 -0.258 0.229 -0.458 -0.0268 6.21 92 159 -- --
44.54 0.311 3.11 0.121 0.193 -0.278 0.047 -- -0.0325 6.05 92 158 -- --
44.39 0.31 3.11 0.122 0.192 -0.252 -- -0.327 -0.0279 6.02 92 155 -- --
44.55 0.311 3.11 0.119 0.192 -0.275 -- -- -0.0319 6 92 158 -- --
45.79 0.315 3.11 0.133 -- -0.0863 -- -0.352 0.00434 -- 90.15 89 -- --
45.85 0.317 3.1 0.0909 0.0968 -- 0.148 -- 0.00985 8.44 -- -- -- --
45.88 0.317 3.1 0.0944 0.102 -- -- -- 0.00918 7.5 -- -- -- --
45.96 0.316 3.11 0.11 -- -0.135 -- -- -0.00891 -- 92 143 -- --
44.92 0.312 3.11 -- 0.189 -0.26 -- -- -0.0424 5.99 92 158 -- --
46.44 0.318 3.1 0.096 -- -- -- -- 0.0108 -- -- -- -- --
46.12 0.318 3.1 -- 0.103 -- -- -- -0.00134 7.44 -- -- -- --
46.28 0.317 3.11 -- -- -0.122 -- -- -0.0184 -- 92 140 -- --
46.68 0.319 3.1 -- -- -- -- -- 0.000137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.89 radiation 10.0 10 > th dose independent rect. 6 1
27 41.89 radiation 10.0 10 > th dose dependent rect. 6 1
53 43.14 atmosphere 1005.0 30 > th dose dependent rect. 2 2
56 43.40 atmosphere 1010.0 10 < th dose independent rect. 3 23
57 43.40 temperature 25.0 720 > th dose dependent rect. 3 5
62 43.48 atmosphere 1010.0 10 < th dose independent rect. 3 8
64 43.53 humidity 90.0 90 < th dose independent rect. 2 1
65 43.53 temperature 15.0 90 > th dose independent rect. 5 22
67 43.56 temperature 10.0 30 > th dose dependent rect. 3 23
68 43.59 atmosphere 1005.0 30 > th dose dependent rect. 6 1
70 43.61 temperature 25.0 720 > th dose independent rect. 3 6
71 43.61 atmosphere 1010.0 10 < th dose independent rect. 3 19
72 43.61 wind 3.0 30 < th dose dependent rect. 6 1
78 43.68 atmosphere 1010.0 30 < th dose dependent rect. 2 1
79 43.69 radiation 10.0 30 < th dose independent rect. 3 23
81 43.70 temperature 15.0 720 > th dose independent rect. 3 16
83 43.71 atmosphere 1005.0 90 > th dose independent rect. 2 1
84 43.71 atmosphere 1000.0 90 > th dose independent rect. 3 23
93 43.74 wind 1.0 10 < th dose independent rect. 2 1
95 43.74 temperature 15.0 720 > th dose independent rect. 7 8
96 43.74 temperature 15.0 30 > th dose independent rect. 3 23
97 43.74 wind 3.0 10 < th dose dependent rect. 2 1
109 43.76 temperature 10.0 30 > th dose independent rect. 2 1
111 43.76 temperature 25.0 30 < th dose independent rect. 2 1
113 43.76 humidity 50.0 30 > th dose independent rect. 2 1
116 43.76 humidity 90.0 30 > th dose independent rect. 2 1
117 43.76 atmosphere 995.0 30 > th dose independent rect. 2 1
118 43.76 atmosphere 1010.0 30 < th dose independent rect. 2 1
120 43.76 radiation 1.0 30 < th dose independent rect. 2 1
125 43.76 precipitation 0.1 30 < th dose independent rect. 2 1
131 43.76 temperature 10.0 30 > th dose dependent rect. 2 1
133 43.76 humidity 50.0 30 > th dose dependent rect. 2 1
137 43.76 radiation 1.0 30 < th dose dependent rect. 2 1
142 43.76 precipitation 0.1 30 < th dose dependent rect. 2 1
152 43.78 temperature 15.0 720 > th dose independent rect. 15 16
156 43.78 temperature 30.0 30 < th dose dependent rect. 2 1
168 43.80 atmosphere 1010.0 10 < th dose independent rect. 3 12
215 43.83 humidity 90.0 30 > th dose independent rect. 3 11
217 43.84 wind 1.0 30 > th dose independent rect. 2 1
218 43.84 temperature 15.0 720 > th dose independent rect. 19 8
222 43.85 humidity 90.0 30 > th dose independent rect. 3 9
225 43.86 wind 9.0 30 < th dose independent rect. 3 23
229 43.87 atmosphere 1010.0 10 < th dose independent rect. 3 4
233 43.88 radiation 10.0 30 < th dose independent rect. 3 7
237 43.88 temperature 25.0 720 > th dose dependent rect. 21 13
245 43.89 radiation 10.0 30 < th dose dependent rect. 3 23
246 43.90 temperature 10.0 30 > th dose dependent rect. 3 3
247 43.91 radiation 10.0 30 < th dose independent rect. 3 5
256 43.93 humidity 90.0 30 > th dose independent rect. 3 7
257 43.93 wind 9.0 720 < th dose independent rect. 19 8
259 43.93 wind 9.0 90 < th dose independent rect. 5 22
262 43.93 temperature 25.0 720 > th dose dependent rect. 20 15
264 43.94 atmosphere 1015.0 720 < th dose independent rect. 3 8
265 43.94 temperature 30.0 30 < th dose dependent rect. 6 1
272 43.95 atmosphere 1015.0 720 < th dose independent rect. 3 16
284 43.97 humidity 60.0 720 > th dose independent rect. 19 8
288 43.97 temperature 15.0 10 > th dose independent rect. 6 21
301 43.98 temperature 30.0 720 < th dose independent rect. 19 8
303 43.98 atmosphere 995.0 720 > th dose independent rect. 19 8
304 43.98 radiation 1.0 720 < th dose independent rect. 19 8
313 43.98 radiation 1.0 720 < th dose dependent rect. 19 8
334 43.99 wind 3.0 10 < th dose independent rect. 3 3
335 43.99 temperature 30.0 14400 > th dose independent rect. 15 3
337 43.99 temperature 30.0 14400 < th dose independent rect. 15 4
388 44.00 radiation 40.0 720 < th dose independent rect. 15 16
394 44.00 wind 7.0 10 < th dose independent rect. 6 21
399 44.00 radiation 10.0 30 < th dose dependent rect. 3 7
401 44.00 humidity 80.0 10 > th dose dependent rect. 3 10
402 44.00 radiation 1.0 90 < th dose dependent rect. 3 13
404 44.00 temperature 15.0 30 > th dose dependent rect. 3 19
423 44.01 precipitation 0.1 90 < th dose independent rect. 5 22
433 44.01 precipitation 0.1 90 < th dose dependent rect. 5 22
437 44.02 radiation 1.0 90 < th dose independent rect. 3 12
441 44.02 radiation 10.0 30 < th dose dependent rect. 3 5
446 44.03 temperature 30.0 14400 > th dose independent sin 13 NA
447 44.03 temperature 30.0 14400 < th dose independent sin 13 NA
448 44.03 radiation 10.0 10 < th dose independent rect. 3 3
484 44.05 wind 9.0 720 < th dose independent rect. 15 16
489 44.05 humidity 80.0 30 > th dose dependent rect. 6 1
490 44.05 humidity 50.0 30 > th dose dependent rect. 3 3
538 44.07 temperature 25.0 720 < th dose independent rect. 2 9
570 44.07 radiation 40.0 30 < th dose dependent rect. 3 8
573 44.07 wind 9.0 30 < th dose dependent rect. 6 21
586 44.08 atmosphere 1015.0 720 < th dose independent rect. 7 8
616 44.08 humidity 90.0 30 > th dose dependent rect. 3 19
620 44.08 humidity 90.0 90 > th dose dependent rect. 1 22
629 44.09 temperature 10.0 10 > th dose independent rect. 3 3
633 44.09 temperature 30.0 10 < th dose independent rect. 3 3
635 44.09 humidity 50.0 10 > th dose independent rect. 3 3
641 44.09 atmosphere 995.0 10 > th dose independent rect. 3 3
664 44.09 temperature 30.0 14400 > th dose dependent rect. 15 1
665 44.09 radiation 1.0 4320 < th dose dependent rect. 23 1
683 44.10 temperature 25.0 1440 > th dose dependent rect. 17 3
686 44.10 humidity 90.0 30 > th dose dependent rect. 3 7
741 44.11 temperature 20.0 720 > th dose dependent sin 6 NA
760 44.12 humidity 90.0 30 > th dose independent rect. 3 5
776 44.12 humidity 90.0 90 > th dose dependent rect. 1 13
792 44.13 temperature 20.0 720 > th dose dependent rect. 3 1
799 44.13 humidity 90.0 90 > th dose dependent rect. 1 9
801 44.13 humidity 90.0 90 > th dose dependent rect. 1 11
805 44.13 temperature 25.0 1440 > th dose dependent rect. 17 16
853 44.14 precipitation 0.1 90 < th dose independent rect. 3 23
900 44.14 precipitation 0.1 90 < th dose dependent rect. 3 23
924 44.15 atmosphere 995.0 4320 > th dose independent rect. 12 5
963 44.15 temperature 25.0 14400 > th dose dependent rect. 17 6
981 44.15 radiation 1.0 90 < th dose dependent rect. 3 16
984 44.15 humidity 90.0 90 > th dose dependent rect. 1 18