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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0212000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0215) R2 : 0.00591
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0746 (0.0453) R2dN8 : 0.00763 R2N8 : 0.00591
σ : 0.405
deviance : 75.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.23 0.399 2.83 0.226 0.0598 -3.96 -0.224 18.2 0.0889 2.6 0.6196 214 -- --
74.79 0.406 2.88 0.0912 0.059 -0.0863 -0.23 -- 0.0826 2.65 0.6196 214 -- --
71.21 0.393 2.83 0.229 0.0631 -4.08 -- 19.3 0.0908 4.7 2 216 -- --
73.26 0.399 2.87 0.0689 0.066 0.795 -- -- 0.0923 2.98 0.504 238 -- --
71.36 0.393 2.82 0.277 -- -5.17 -- 23.5 0.0901 -- 2.016 274 -- --
74.79 0.405 2.88 0.0903 0.0583 -- -0.233 -- 0.0827 2.65 -- -- -- --
74.98 0.406 2.87 0.0961 0.0583 -- -- -- 0.0841 2.97 -- -- -- --
73.49 0.399 2.87 0.0665 -- 0.778 -- -- 0.0917 -- 0.5 238 -- --
73.34 0.399 2.87 -- 0.0709 0.818 -- -- 0.0832 4.2 0.5 210 -- --
75.18 0.405 2.87 0.0986 -- -- -- -- 0.0856 -- -- -- -- --
75.23 0.406 2.88 -- 0.0602 -- -- -- 0.0734 2.98 -- -- -- --
73.62 0.4 2.87 -- -- 0.797 -- -- 0.0843 -- 0.5 208 -- --
75.44 0.405 2.88 -- -- -- -- -- 0.0746 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.50 precipitation 0.1 90 > th dose independent rect. 21 1
5 66.50 precipitation 0.1 90 > th dose dependent rect. 21 1
9 69.29 temperature 25.0 30 > th dose independent rect. 21 1
13 70.01 humidity 90.0 90 > th dose dependent rect. 20 1
17 70.97 wind 1.0 270 < th dose independent rect. 18 1
18 70.97 precipitation 0.1 270 > th dose independent rect. 18 1
19 70.97 wind 1.0 270 < th dose dependent rect. 18 1
20 70.97 precipitation 0.1 270 > th dose dependent rect. 18 1
23 71.11 precipitation 0.1 270 > th dose dependent rect. 18 4
25 71.12 precipitation 0.1 270 > th dose independent rect. 18 4
50 71.30 humidity 90.0 10 > th dose dependent rect. 22 1
73 71.58 humidity 90.0 270 > th dose dependent rect. 18 1
79 71.70 humidity 90.0 270 > th dose dependent rect. 18 3
87 71.93 wind 9.0 4320 < th dose independent rect. 3 1
90 72.02 wind 1.0 270 < th dose independent rect. 14 5
93 72.20 precipitation 0.1 270 > th dose dependent rect. 15 5
100 72.28 radiation 1.0 43200 < th dose dependent rect. 3 1
106 72.32 humidity 90.0 10 > th dose independent rect. 22 1
111 72.34 wind 9.0 4320 > th dose dependent rect. 13 1
132 72.41 temperature 10.0 1440 > th dose independent rect. 3 1
135 72.41 temperature 30.0 1440 < th dose independent rect. 3 1
139 72.41 humidity 50.0 1440 > th dose independent rect. 3 1
148 72.41 atmosphere 995.0 1440 > th dose independent rect. 3 1
149 72.41 radiation 1.0 1440 < th dose independent rect. 3 1
169 72.41 temperature 10.0 1440 > th dose independent rect. 4 23
187 72.43 wind 9.0 4320 > th dose dependent rect. 23 17
191 72.44 wind 9.0 4320 > th dose dependent rect. 3 13
225 72.57 temperature 20.0 10 > th dose dependent rect. 20 2
236 72.60 radiation 30.0 90 > th dose independent rect. 11 1
251 72.64 humidity 90.0 90 > th dose independent rect. 20 1
276 72.77 wind 9.0 4320 > th dose independent rect. 13 1
277 72.77 precipitation 0.1 270 > th dose independent rect. 15 5
278 72.77 wind 9.0 4320 > th dose dependent sin 4 NA
291 72.83 atmosphere 1015.0 1440 < th dose independent rect. 3 1
293 72.83 wind 9.0 4320 > th dose independent rect. 23 17
298 72.84 wind 9.0 4320 > th dose independent rect. 3 13
330 72.90 wind 9.0 720 < th dose independent rect. 15 7
343 72.92 wind 9.0 4320 > th dose dependent rect. 11 5
347 72.93 wind 9.0 4320 > th dose dependent rect. 18 22
354 72.95 wind 1.0 720 > th dose independent rect. 11 1
360 72.96 atmosphere 1005.0 90 > th dose independent rect. 20 1
362 72.96 radiation 30.0 10 < th dose independent rect. 23 21
366 72.97 wind 7.0 30 < th dose independent rect. 11 12
372 72.98 wind 9.0 4320 > th dose independent rect. 15 1
374 72.98 wind 1.0 10 > th dose independent rect. 11 12
376 72.98 precipitation 0.1 30 < th dose independent rect. 11 12
379 72.98 precipitation 0.1 30 < th dose dependent rect. 11 12
395 73.00 wind 9.0 720 < th dose independent rect. 10 17
397 73.00 precipitation 0.1 270 > th dose dependent sin 15 NA
398 73.00 temperature 25.0 90 > th dose dependent rect. 1 1
400 73.01 precipitation 0.1 720 < th dose independent rect. 13 11
409 73.01 precipitation 0.1 720 < th dose dependent rect. 13 11
410 73.02 wind 9.0 720 < th dose independent rect. 3 7
411 73.02 temperature 10.0 720 > th dose independent rect. 3 7
412 73.02 atmosphere 995.0 720 > th dose independent rect. 3 7
417 73.02 temperature 10.0 720 > th dose independent rect. 10 17
423 73.03 precipitation 0.1 720 < th dose independent rect. 12 13
424 73.03 wind 9.0 4320 < th dose independent rect. 23 17
425 73.03 wind 9.0 4320 > th dose dependent rect. 15 1
428 73.03 precipitation 0.1 720 < th dose dependent rect. 12 13
429 73.04 humidity 50.0 720 > th dose independent rect. 11 1
430 73.04 temperature 10.0 720 > th dose independent rect. 15 7
431 73.04 atmosphere 1015.0 720 < th dose independent rect. 3 7
432 73.04 precipitation 0.1 720 < th dose independent rect. 12 7
433 73.04 temperature 20.0 30 > th dose independent rect. 11 12
435 73.04 temperature 10.0 720 > th dose independent rect. 22 17
439 73.04 precipitation 0.1 720 < th dose dependent rect. 12 7
442 73.05 temperature 25.0 90 > th dose independent rect. 1 1
452 73.06 wind 9.0 720 < th dose independent rect. 11 1
456 73.06 atmosphere 1000.0 30 > th dose independent rect. 3 23
465 73.07 radiation 30.0 10 > th dose independent rect. 11 1
466 73.07 humidity 60.0 30 > th dose independent rect. 23 12
467 73.07 wind 9.0 4320 < th dose independent rect. 2 14
472 73.07 radiation 20.0 90 > th dose dependent rect. 11 1
495 73.09 wind 9.0 4320 > th dose independent sin 4 NA
497 73.09 wind 9.0 720 < th dose independent rect. 23 1
498 73.09 temperature 10.0 720 > th dose independent rect. 11 1
500 73.09 temperature 10.0 720 > th dose independent rect. 23 1
501 73.09 temperature 30.0 720 < th dose independent rect. 23 1
502 73.09 humidity 50.0 720 > th dose independent rect. 23 1
505 73.09 atmosphere 995.0 720 > th dose independent rect. 11 1
506 73.09 atmosphere 995.0 720 > th dose independent rect. 23 1
507 73.09 atmosphere 1015.0 720 < th dose independent rect. 11 1
508 73.09 radiation 1.0 720 > th dose independent rect. 11 1
509 73.09 radiation 1.0 720 < th dose independent rect. 23 1
514 73.09 precipitation 0.1 720 < th dose independent rect. 11 1
516 73.09 humidity 50.0 720 > th dose independent rect. 3 7
517 73.09 wind 9.0 10 < th dose independent rect. 23 12
519 73.09 temperature 10.0 10 > th dose independent rect. 11 12
523 73.09 temperature 10.0 1440 > th dose independent rect. 12 12
526 73.09 temperature 10.0 10 > th dose independent rect. 23 12
528 73.09 temperature 10.0 1440 > th dose independent rect. 24 12
534 73.09 atmosphere 995.0 10 > th dose independent rect. 23 12
536 73.09 atmosphere 995.0 1440 > th dose independent rect. 24 12
537 73.09 atmosphere 1015.0 10 < th dose independent rect. 11 12
543 73.09 temperature 10.0 720 > th dose independent rect. 12 23
544 73.09 temperature 10.0 720 > th dose independent rect. 24 23
546 73.09 wind 5.0 10 > th dose dependent rect. 12 1
547 73.09 wind 3.0 30 < th dose dependent rect. 2 1
549 73.09 atmosphere 1005.0 30 > th dose dependent rect. 2 1
550 73.09 radiation 1.0 720 < th dose dependent rect. 23 1
555 73.09 precipitation 0.1 720 < th dose dependent rect. 11 1
558 73.10 wind 3.0 30 < th dose independent rect. 2 1
559 73.10 wind 9.0 4320 < th dose independent rect. 13 1
562 73.10 humidity 90.0 720 < th dose independent rect. 11 1
563 73.10 atmosphere 1005.0 30 > th dose independent rect. 2 1
564 73.10 precipitation 0.1 720 < th dose independent rect. 23 1
567 73.10 radiation 40.0 720 < th dose independent rect. 15 7
574 73.10 precipitation 0.1 30 < th dose independent rect. 3 23
579 73.10 humidity 50.0 720 > th dose dependent rect. 23 1
581 73.10 precipitation 0.1 720 < th dose dependent rect. 23 1
588 73.10 precipitation 0.1 30 < th dose dependent rect. 3 23
593 73.11 humidity 90.0 30 > th dose independent rect. 2 1
606 73.11 humidity 70.0 30 > th dose dependent rect. 2 1
613 73.12 temperature 10.0 30 > th dose independent rect. 2 1
616 73.12 temperature 30.0 30 < th dose independent rect. 2 1
617 73.12 humidity 50.0 30 > th dose independent rect. 2 1
621 73.12 atmosphere 995.0 30 > th dose independent rect. 2 1
623 73.12 atmosphere 1010.0 30 < th dose independent rect. 2 1
625 73.12 radiation 1.0 30 < th dose independent rect. 2 1
630 73.12 precipitation 0.1 30 < th dose independent rect. 2 1
633 73.12 wind 9.0 720 < th dose independent rect. 24 23
634 73.12 temperature 10.0 30 > th dose independent rect. 3 23
637 73.12 humidity 50.0 30 > th dose dependent rect. 2 1
640 73.12 radiation 1.0 30 < th dose dependent rect. 2 1
645 73.12 precipitation 0.1 30 < th dose dependent rect. 2 1
668 73.14 atmosphere 1015.0 30 < th dose dependent rect. 2 1
679 73.15 temperature 30.0 30 < th dose dependent rect. 2 1
687 73.16 radiation 40.0 10 < th dose independent rect. 23 12
698 73.17 wind 1.0 30 > th dose independent rect. 2 1
700 73.17 wind 9.0 4320 < th dose independent rect. 15 1
715 73.18 temperature 30.0 30 < th dose independent rect. 3 23
740 73.20 precipitation 0.1 30 < th dose independent rect. 23 12
746 73.20 precipitation 0.1 30 < th dose dependent rect. 23 12
750 73.21 humidity 90.0 270 > th dose independent rect. 18 1
799 73.23 temperature 30.0 30 < th dose independent rect. 23 12
830 73.24 precipitation 0.1 270 < th dose independent sin 16 NA
835 73.24 humidity 50.0 10 > th dose independent rect. 11 12
839 73.24 precipitation 0.1 720 < th dose independent rect. 12 22
841 73.24 precipitation 0.1 270 < th dose dependent sin 16 NA
872 73.24 precipitation 0.1 720 < th dose dependent rect. 12 22
874 73.25 wind 9.0 4320 < th dose independent sin 4 NA
921 73.27 precipitation 0.1 270 > th dose dependent rect. 1 19
952 73.28 humidity 50.0 720 > th dose dependent rect. 11 1
988 73.29 precipitation 0.1 720 < th dose independent rect. 7 17