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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0210900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0736) R2 : 0.396
β1 : -0.917 (0.286) R2dD : 0.0159 R2D : -0.0748
β2 : 1.01 (0.173) R2dC : 0.0493 R2C : -0.0397
β3 : 1.72 (0.218) R2dE : 0.0966 R2E : -0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.22 (0.673) R2dD*E : 0.0407 R2D*E : -0.0357
γ1 : -2.32 (0.161) R2dN8 : 0.405 R2N8 : 0.228
σ : 1.35
deviance : 842.07
__
_____
C
peak time of C : 10.8
E
wheather : humidity
threshold : 79.48
memory length : 1430
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
842.66 1.36 11.3 -0.905 1 1.68 0.05 3.24 -2.32 10.8 79.01 1434 11 1.05
891.25 1.39 11.3 -1.3 1.12 1.51 -0.00174 -- -2.33 10.6 79.28 1433 11.1 0.988
842.07 1.35 11.3 -0.917 1.01 1.72 -- 3.22 -2.32 10.8 79.48 1430 11.1 1.08
886.37 1.39 11.3 -1.34 1.04 1.44 -- -- -2.36 10.8 78.99 1425 11.2 1.03
901.37 1.4 11.3 -0.875 -- 1.65 -- 3.29 -2.31 -- 79.26 1440 11.1 0.972
981.03 1.47 11.3 -1.08 0.943 -- -0.0514 -- -2.13 10.6 -- -- -- --
981.04 1.47 11.3 -1.08 0.943 -- -- -- -2.13 10.6 -- -- -- --
930.22 1.42 11.3 -1.13 -- 2.02 -- -- -2.28 -- 78 2880 11.1 0.948
931.32 1.42 11.3 -- 1.06 1.36 -- -- -2.26 10.9 78.97 1424 11.2 1.01
1035.72 1.5 11.3 -1.1 -- -- -- -- -2.14 -- -- -- -- --
1011.7 1.49 11.3 -- 0.95 -- -- -- -2.01 10.7 -- -- -- --
975.6 1.45 11.3 -- -- 1.96 -- -- -2.3 -- 78.12 2882 11.1 0.867
1067.38 1.52 11.3 -- -- -- -- -- -2.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 846.99 humidity 80.0 1440 < th dose independent rect. 11 1
2 847.43 humidity 80.0 1440 > th dose independent rect. 11 1
3 855.19 humidity 80.0 14400 > th dose independent rect. 10 1
5 857.26 humidity 80.0 14400 < th dose independent rect. 10 2
7 858.58 humidity 90.0 14400 > th dose independent rect. 19 4
12 859.75 precipitation 0.1 4320 > th dose independent rect. 5 2
14 859.91 precipitation 0.1 4320 > th dose dependent rect. 5 2
16 860.51 humidity 80.0 14400 > th dose dependent rect. 10 1
22 861.29 humidity 90.0 14400 > th dose independent rect. 7 1
38 863.62 humidity 90.0 4320 > th dose dependent rect. 7 1
40 863.66 precipitation 0.1 4320 < th dose independent rect. 5 2
41 863.66 precipitation 0.1 4320 < th dose dependent rect. 5 2
48 864.15 precipitation 0.1 4320 < th dose independent rect. 5 4
49 864.15 precipitation 0.1 4320 < th dose dependent rect. 5 4
50 864.17 precipitation 0.1 4320 > th dose dependent rect. 5 4
51 864.19 humidity 90.0 14400 < th dose independent rect. 7 1
59 864.99 precipitation 0.1 4320 > th dose independent rect. 5 4
64 865.56 wind 3.0 14400 < th dose independent rect. 3 1
71 866.42 humidity 90.0 14400 > th dose dependent rect. 20 1
79 867.04 wind 3.0 43200 < th dose independent rect. 11 2
81 867.25 precipitation 0.1 14400 > th dose dependent rect. 13 1
84 867.42 humidity 90.0 14400 < th dose independent rect. 20 1
93 867.73 radiation 30.0 4320 > th dose independent rect. 16 17
100 867.85 wind 3.0 43200 > th dose independent rect. 12 1
102 867.95 humidity 90.0 14400 < th dose independent rect. 19 4
104 868.07 humidity 80.0 1440 > th dose dependent rect. 10 2
109 868.23 radiation 30.0 4320 > th dose independent rect. 7 2
125 868.27 humidity 90.0 14400 > th dose dependent rect. 19 3
128 868.34 radiation 30.0 4320 < th dose independent rect. 16 17
134 868.59 atmosphere 1005.0 43200 < th dose independent rect. 23 1
143 868.74 precipitation 0.1 4320 > th dose independent rect. 3 14
148 868.87 humidity 80.0 14400 > th dose dependent rect. 8 6
150 868.95 precipitation 0.1 4320 < th dose independent rect. 3 14
151 868.95 precipitation 0.1 4320 < th dose dependent rect. 3 14
165 869.58 wind 3.0 14400 > th dose independent rect. 3 1
167 869.68 radiation 30.0 4320 < th dose independent rect. 7 2
169 869.70 radiation 30.0 4320 < th dose independent rect. 4 5
175 869.79 radiation 30.0 4320 < th dose independent rect. 18 15
179 869.84 radiation 30.0 4320 < th dose independent rect. 24 9
180 869.84 radiation 30.0 4320 < th dose independent rect. 22 11
193 869.95 humidity 90.0 14400 > th dose independent rect. 6 17
209 870.43 precipitation 0.1 14400 > th dose independent rect. 18 1
219 870.81 precipitation 0.1 4320 > th dose dependent rect. 3 14
220 870.83 precipitation 0.1 14400 < th dose independent rect. 18 1
222 870.83 precipitation 0.1 14400 < th dose dependent rect. 18 1
229 871.11 wind 3.0 1440 < th dose dependent rect. 11 1
232 871.26 humidity 90.0 14400 > th dose independent rect. 6 4
244 871.63 precipitation 0.1 4320 > th dose dependent rect. 1 16
255 872.00 precipitation 0.1 4320 < th dose independent sin 2 NA
256 872.00 precipitation 0.1 4320 < th dose dependent sin 2 NA
260 872.04 precipitation 0.1 4320 > th dose independent sin 2 NA
263 872.06 precipitation 0.1 4320 > th dose dependent rect. 16 1
266 872.11 humidity 80.0 14400 > th dose dependent rect. 8 12
270 872.28 wind 1.0 4320 < th dose dependent rect. 6 1
280 872.49 precipitation 0.1 4320 < th dose independent rect. 1 19
281 872.49 precipitation 0.1 4320 < th dose dependent rect. 1 19
282 872.50 wind 3.0 43200 < th dose dependent rect. 11 2
294 872.70 precipitation 0.1 4320 > th dose independent rect. 1 19
306 873.07 humidity 90.0 14400 < th dose dependent rect. 3 1
364 873.95 humidity 90.0 14400 > th dose dependent rect. 3 20
372 874.07 radiation 1.0 14400 < th dose dependent rect. 7 1
379 874.20 precipitation 0.1 4320 > th dose dependent sin 3 NA
389 874.46 precipitation 0.1 14400 > th dose dependent rect. 18 1
396 874.72 atmosphere 1005.0 43200 < th dose independent rect. 11 1
426 875.08 humidity 90.0 14400 < th dose independent rect. 7 16
429 875.09 humidity 90.0 14400 > th dose dependent sin 16 NA
442 875.23 precipitation 0.1 14400 < th dose independent rect. 16 4
443 875.23 precipitation 0.1 14400 < th dose dependent rect. 16 4
445 875.26 humidity 90.0 14400 > th dose independent sin 18 NA
448 875.27 precipitation 0.1 14400 > th dose independent rect. 16 4
452 875.37 humidity 80.0 14400 > th dose independent rect. 13 1
464 875.48 humidity 80.0 1440 > th dose dependent rect. 7 5
486 875.98 precipitation 0.1 14400 > th dose independent rect. 16 1
488 876.01 precipitation 0.1 14400 < th dose independent rect. 16 1
489 876.01 precipitation 0.1 14400 < th dose dependent rect. 16 1
494 876.07 wind 9.0 43200 > th dose independent rect. 2 12
495 876.07 wind 9.0 43200 > th dose independent rect. 24 14
504 876.17 humidity 80.0 1440 < th dose independent rect. 8 4
511 876.29 radiation 1.0 14400 > th dose independent rect. 18 11
541 876.54 wind 1.0 4320 < th dose independent rect. 18 2
547 876.64 humidity 80.0 14400 < th dose independent rect. 13 1
552 876.68 wind 9.0 43200 > th dose dependent rect. 10 4
563 876.80 wind 9.0 43200 < th dose independent rect. 2 12
564 876.82 radiation 1.0 14400 > th dose independent rect. 18 1
577 876.89 wind 9.0 43200 > th dose independent rect. 5 9
582 876.95 humidity 80.0 1440 > th dose independent rect. 7 5
585 876.97 humidity 80.0 43200 < th dose dependent rect. 23 2
590 877.08 atmosphere 1005.0 43200 > th dose independent rect. 11 1
592 877.09 wind 9.0 43200 < th dose independent rect. 24 14
609 877.28 wind 9.0 43200 > th dose independent rect. 7 7
635 877.47 wind 3.0 43200 < th dose dependent rect. 21 16
642 877.54 wind 1.0 4320 > th dose independent rect. 17 3
649 877.66 wind 3.0 43200 < th dose independent rect. 6 1
671 877.88 wind 3.0 43200 > th dose independent rect. 6 1
701 878.15 humidity 90.0 14400 > th dose dependent rect. 7 21
705 878.20 wind 9.0 43200 < th dose independent rect. 6 8
733 878.38 wind 3.0 43200 < th dose dependent rect. 5 8
744 878.45 radiation 30.0 4320 > th dose dependent rect. 16 17
755 878.62 wind 1.0 43200 > th dose independent rect. 24 2
767 878.73 precipitation 0.1 14400 > th dose independent rect. 11 9
773 878.77 atmosphere 1005.0 43200 < th dose independent rect. 1 1
774 878.77 humidity 80.0 14400 > th dose dependent sin 22 NA
778 878.83 radiation 30.0 4320 > th dose dependent rect. 7 2
796 878.86 precipitation 0.1 4320 > th dose independent rect. 3 11
797 878.86 precipitation 0.1 4320 < th dose independent rect. 3 11
799 878.86 precipitation 0.1 4320 < th dose dependent rect. 3 11
819 878.98 precipitation 0.1 14400 < th dose independent rect. 11 9
820 878.98 precipitation 0.1 14400 < th dose dependent rect. 11 9
824 878.99 wind 3.0 43200 < th dose dependent rect. 23 14
843 879.16 atmosphere 1005.0 43200 < th dose independent rect. 22 4
849 879.18 precipitation 0.1 4320 > th dose dependent rect. 3 11
881 879.63 wind 3.0 14400 < th dose independent rect. 24 5
900 879.72 wind 5.0 14400 < th dose dependent rect. 2 2
938 879.93 humidity 80.0 43200 > th dose independent rect. 4 1
951 880.03 radiation 40.0 4320 < th dose dependent rect. 7 2