Os01g0208700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoenolpyruvate carboxylase (Fragment).
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Os01g0208700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoenolpyruvate carboxylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.9 | 0.278 | 14.3 | -0.109 | 1.1 | 0.32 | -0.429 | 1.89 | -0.0419 | 23.4 | 19.73 | 4055 | -- | -- |
| 37.83 | 0.286 | 14.3 | -0.686 | 1.1 | 0.454 | -0.219 | -- | -0.202 | 23.1 | 18.44 | 36039 | -- | -- |
| 35.48 | 0.277 | 14.3 | -0.108 | 1.11 | 0.304 | -- | 1.74 | -0.053 | 23.5 | 18.83 | 3013 | -- | -- |
| 33.49 | 0.27 | 14.4 | -1.11 | 1.11 | 0.637 | -- | -- | -0.43 | 23.5 | 25.26 | 47520 | -- | -- |
| 106.92 | 0.482 | 14.3 | -0.278 | -- | 0.469 | -- | 1.09 | -0.094 | -- | 22.57 | 2366 | -- | -- |
| 41.33 | 0.301 | 14.3 | -0.471 | 1.13 | -- | -0.32 | -- | -0.112 | 23.5 | -- | -- | -- | -- |
| 41.77 | 0.303 | 14.3 | -0.458 | 1.13 | -- | -- | -- | -0.111 | 23.5 | -- | -- | -- | -- |
| 96.65 | 0.458 | 14.3 | -0.675 | -- | 0.936 | -- | -- | -0.216 | -- | 23.9 | 925 | -- | -- |
| 46.63 | 0.32 | 14.3 | -- | 1.18 | 0.208 | -- | -- | -0.0713 | 23.7 | 25.26 | 47520 | -- | -- |
| 122.22 | 0.517 | 14.3 | -0.427 | -- | -- | -- | -- | -0.0988 | -- | -- | -- | -- | -- |
| 47.3 | 0.322 | 14.3 | -- | 1.13 | -- | -- | -- | -0.0602 | 23.5 | -- | -- | -- | -- |
| 108 | 0.484 | 14.3 | -- | -- | 0.787 | -- | -- | -0.123 | -- | 24.1 | 918 | -- | -- |
| 127.04 | 0.526 | 14.3 | -- | -- | -- | -- | -- | -0.0514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.24 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 2 | 31.44 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 3 | 31.66 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 8 | 31.81 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 22 | 31.88 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 51 | 32.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 121 | 32.26 | temperature | 25 | 43200 | < th | dose independent | sin | 14 | NA |
| 131 | 32.28 | temperature | 25 | 43200 | > th | dose independent | sin | 14 | NA |
| 151 | 32.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 182 | 32.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 187 | 32.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 189 | 32.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 192 | 32.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 211 | 32.35 | temperature | 20 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 229 | 32.37 | temperature | 25 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 297 | 32.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 368 | 32.49 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 409 | 32.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 480 | 32.55 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 494 | 32.55 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 544 | 32.57 | temperature | 20 | 43200 | > th | dose dependent | sin | 12 | NA |
| 560 | 32.58 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 576 | 32.58 | temperature | 30 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 588 | 32.59 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 614 | 32.59 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 615 | 32.59 | temperature | 10 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 633 | 32.60 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |
| 651 | 32.60 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 664 | 32.60 | temperature | 25 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 909 | 32.66 | temperature | 25 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 930 | 32.67 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |