Os01g0208000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os01g0208000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.56 | 0.698 | 4.22 | -3.14 | 1.66 | 0.461 | -3 | -1.31 | -0.196 | 23.5 | 20.2 | 234 | -- | -- |
| 223.8 | 0.697 | 4.2 | -2.99 | 1.72 | 0.817 | -2.84 | -- | -0.164 | 23.5 | 19.1 | 144 | -- | -- |
| 253.11 | 0.741 | 4.18 | -3.04 | 1.61 | 0.132 | -- | -1.95 | -0.135 | 23.3 | 20.6 | 616 | -- | -- |
| 259.16 | 0.755 | 4.18 | -2.77 | 1.73 | 0.516 | -- | -- | -0.132 | 23.6 | 20.6 | 616 | -- | -- |
| 378.15 | 0.906 | 4.17 | -3.28 | -- | 0.938 | -- | -1.61 | -0.284 | -- | 25.12 | 863 | -- | -- |
| 238.18 | 0.724 | 4.16 | -2.74 | 1.61 | -- | -2.76 | -- | -0.0403 | 23.3 | -- | -- | -- | -- |
| 270.63 | 0.77 | 4.16 | -2.63 | 1.62 | -- | -- | -- | -0.0315 | 23.5 | -- | -- | -- | -- |
| 396.94 | 0.928 | 4.2 | -2.89 | -- | 0.972 | -- | -- | -0.362 | -- | 25.29 | 859 | -- | -- |
| 280.84 | 0.781 | 3.91 | -- | 1.61 | -1.99 | -- | -- | 0.966 | 23.6 | 21.59 | 47520 | -- | -- |
| 435.01 | 0.975 | 4.12 | -2.59 | -- | -- | -- | -- | -0.0141 | -- | -- | -- | -- | -- |
| 453.3 | 0.996 | 4.09 | -- | 1.59 | -- | -- | -- | 0.262 | 23.4 | -- | -- | -- | -- |
| 452.73 | 0.991 | 3.91 | -- | -- | -1.88 | -- | -- | 0.887 | -- | 21.02 | 47520 | -- | -- |
| 611.84 | 1.15 | 4.05 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 11 |
| 9 | 207.79 | temperature | 20 | 270 | > th | dose dependent | sin | 14 | NA |
| 15 | 209.09 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 10 |
| 23 | 209.89 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 11 |
| 32 | 210.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 42 | 211.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 12 |
| 45 | 211.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 13 |
| 54 | 211.79 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 13 |
| 61 | 212.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 73 | 212.34 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 10 |
| 74 | 212.37 | temperature | 25 | 270 | < th | dose independent | sin | 14 | NA |
| 94 | 212.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 96 | 212.70 | temperature | 25 | 270 | > th | dose independent | sin | 14 | NA |
| 99 | 212.84 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 17 |
| 102 | 212.90 | temperature | 25 | 270 | < th | dose dependent | sin | 15 | NA |
| 107 | 212.96 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 116 | 213.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 9 |
| 122 | 213.17 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 11 |
| 149 | 213.41 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 17 |
| 186 | 213.67 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 7 |
| 187 | 213.69 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 6 |
| 190 | 213.70 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 8 |
| 191 | 213.70 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 208 | 213.84 | temperature | 20 | 30 | > th | dose independent | sin | 14 | NA |
| 369 | 215.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 376 | 215.10 | temperature | 20 | 10 | < th | dose independent | sin | 13 | NA |
| 425 | 215.34 | temperature | 20 | 720 | > th | dose dependent | sin | 18 | NA |
| 426 | 215.34 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 599 | 216.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 11 |
| 667 | 216.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 702 | 216.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 733 | 217.00 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 776 | 217.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 847 | 217.41 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 899 | 217.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 922 | 217.73 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 8 |
| 928 | 217.77 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 22 |