Os01g0207900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0207900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 411.78 | 0.953 | 3.15 | 1.15 | 0.064 | 0.426 | -1.13 | 4.86 | -0.166 | 2.37 | 24.73 | 4662 | -- | -- |
| 418.45 | 0.953 | 3.26 | 0.0302 | 0.0584 | 0.848 | -1.14 | -- | -0.219 | 1.7 | 31.14 | 4935 | -- | -- |
| 416.14 | 0.95 | 3.15 | 1.16 | 0.089 | 0.429 | -- | 4.69 | -0.165 | 23 | 24.46 | 4661 | -- | -- |
| 423.33 | 0.958 | 3.26 | 0.0479 | 0.0548 | 0.8 | -- | -- | -0.239 | 23.7 | 30.97 | 4927 | -- | -- |
| 416.63 | 0.951 | 3.14 | 1.2 | -- | 0.415 | -- | 4.88 | -0.154 | -- | 24.69 | 4687 | -- | -- |
| 445.05 | 0.989 | 3.3 | 0.222 | 0.0968 | -- | -1.09 | -- | -0.394 | 2.3 | -- | -- | -- | -- |
| 448.9 | 0.992 | 3.3 | 0.253 | 0.128 | -- | -- | -- | -0.386 | 23.1 | -- | -- | -- | -- |
| 423.51 | 0.958 | 3.26 | 0.0504 | -- | 0.801 | -- | -- | -0.239 | -- | 31.1 | 4934 | -- | -- |
| 423.38 | 0.958 | 3.26 | -- | 0.0559 | 0.801 | -- | -- | -0.244 | 23.1 | 31.07 | 4933 | -- | -- |
| 449.92 | 0.991 | 3.29 | 0.256 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 450.59 | 0.993 | 3.3 | -- | 0.131 | -- | -- | -- | -0.415 | 23.3 | -- | -- | -- | -- |
| 423.58 | 0.959 | 3.26 | -- | -- | 0.809 | -- | -- | -0.242 | -- | 31.1 | 4934 | -- | -- |
| 451.66 | 0.992 | 3.3 | -- | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 402.51 | radiation | 10 | 10 | < th | dose independent | rect. | 11 | 4 |
| 9 | 405.31 | radiation | 10 | 30 | < th | dose dependent | rect. | 11 | 3 |
| 17 | 406.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 21 | 407.21 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 24 | 407.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 25 | 407.56 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 132 | 409.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 194 | 410.22 | humidity | 70 | 30 | < th | dose dependent | rect. | 17 | 16 |
| 268 | 411.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 6 |
| 270 | 411.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 7 |
| 275 | 411.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 312 | 411.66 | temperature | 20 | 4320 | > th | dose dependent | sin | 23 | NA |
| 313 | 411.67 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 374 | 412.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 438 | 412.52 | radiation | 10 | 270 | < th | dose independent | rect. | 11 | 1 |
| 441 | 412.53 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 458 | 412.59 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 550 | 413.10 | humidity | 70 | 30 | < th | dose independent | rect. | 17 | 16 |
| 615 | 413.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 17 |
| 691 | 413.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 710 | 413.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 802 | 413.68 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 809 | 413.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 16 |
| 831 | 413.73 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 13 |