Os01g0207700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os01g0207700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.55 | 0.578 | 3.31 | 2.93 | 0.19 | -1.81 | 0.224 | 20 | -0.203 | 15.1 | 30.49 | 4248 | -- | -- |
| 175.94 | 0.623 | 3.71 | -0.107 | 0.0962 | 0.788 | 0.131 | -- | -0.39 | 1.67 | -59.06 | 47520 | -- | -- |
| 151.63 | 0.574 | 3.31 | 2.93 | 0.182 | -1.81 | -- | 20 | -0.202 | 14.5 | 30.54 | 4247 | -- | -- |
| 175.98 | 0.622 | 3.71 | -0.111 | 0.1 | 0.787 | -- | -- | -0.391 | 2.55 | -59.06 | 47520 | -- | -- |
| 153.51 | 0.577 | 3.3 | 2.99 | -- | -1.87 | -- | 20.2 | -0.211 | -- | 30.92 | 4481 | -- | -- |
| 181.87 | 0.632 | 3.68 | 0.0415 | 0.124 | -- | 0.0126 | -- | -0.28 | 14.2 | -- | -- | -- | -- |
| 181.87 | 0.632 | 3.68 | 0.0418 | 0.124 | -- | -- | -- | -0.28 | 14.2 | -- | -- | -- | -- |
| 176.38 | 0.621 | 3.7 | -0.0856 | -- | 0.67 | -- | -- | -0.372 | -- | -55.02 | 47520 | -- | -- |
| 176.28 | 0.622 | 3.7 | -- | 0.0829 | 0.733 | -- | -- | -0.372 | 2.57 | -61.15 | 47520 | -- | -- |
| 182.78 | 0.632 | 3.68 | 0.0366 | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
| 181.91 | 0.631 | 3.68 | -- | 0.123 | -- | -- | -- | -0.284 | 14.2 | -- | -- | -- | -- |
| 176.56 | 0.621 | 3.7 | -- | -- | 0.643 | -- | -- | -0.36 | -- | -55.02 | 47520 | -- | -- |
| 182.82 | 0.631 | 3.68 | -- | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.74 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 16 | 149.87 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 30 | 149.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 9 |
| 72 | 150.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 106 | 150.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 116 | 150.33 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 127 | 150.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 154 | 150.77 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 180 | 151.05 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 270 | 151.81 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 364 | 152.65 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 365 | 152.67 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 492 | 152.91 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 497 | 152.96 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 499 | 153.01 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 503 | 153.07 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 534 | 153.30 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 538 | 153.31 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 541 | 153.32 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 550 | 153.36 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 552 | 153.39 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 558 | 153.47 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 564 | 153.52 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 582 | 153.63 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 592 | 153.71 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 8 | NA |
| 629 | 153.95 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 663 | 154.10 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 13 |
| 703 | 154.31 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 721 | 154.40 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 798 | 154.59 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 16 |
| 800 | 154.59 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 886 | 154.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 14 |