Os01g0206800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0206800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.92 | 0.538 | 5.18 | -0.518 | 2 | 1.31 | -0.693 | -0.72 | 0.0106 | 5.58 | 24.98 | 1166 | -- | -- |
| 131.07 | 0.533 | 5.18 | -0.364 | 2.02 | 1.25 | -0.771 | -- | 0.0145 | 5.56 | 25.22 | 1162 | -- | -- |
| 131.67 | 0.534 | 5.17 | -0.494 | 2.03 | 1.3 | -- | -0.674 | 0.0492 | 5.64 | 25.4 | 1127 | -- | -- |
| 131.85 | 0.535 | 5.15 | -0.322 | 2.02 | 1.23 | -- | -- | 0.0934 | 5.62 | 25.51 | 1128 | -- | -- |
| 331.73 | 0.848 | 5.22 | -0.554 | -- | 1.52 | -- | -0.649 | -0.00437 | -- | 24.5 | 1265 | -- | -- |
| 181.28 | 0.631 | 5.13 | 0.0211 | 2.08 | -- | -0.614 | -- | 0.188 | 5.14 | -- | -- | -- | -- |
| 182.23 | 0.632 | 5.13 | 0.0215 | 2.08 | -- | -- | -- | 0.191 | 5.16 | -- | -- | -- | -- |
| 331.89 | 0.848 | 5.2 | -0.374 | -- | 1.44 | -- | -- | 0.0467 | -- | 24.6 | 1270 | -- | -- |
| 134.63 | 0.54 | 5.14 | -- | 2.03 | 1.16 | -- | -- | 0.141 | 5.6 | 25.59 | 1127 | -- | -- |
| 408.45 | 0.944 | 5.16 | 0.095 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 182.24 | 0.631 | 5.13 | -- | 2.08 | -- | -- | -- | 0.188 | 5.16 | -- | -- | -- | -- |
| 335.31 | 0.853 | 5.19 | -- | -- | 1.36 | -- | -- | 0.104 | -- | 24.75 | 1265 | -- | -- |
| 408.69 | 0.944 | 5.16 | -- | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 127.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 5 | 128.00 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 29 | 130.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 31 | 130.11 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 33 | 130.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 34 | 130.55 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 47 | 130.80 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 58 | 131.06 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 76 | 131.31 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 82 | 131.39 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 106 | 131.61 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 118 | 131.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 126 | 131.80 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 135 | 131.93 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 141 | 131.98 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 192 | 132.20 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 223 | 132.48 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 244 | 132.57 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 273 | 132.70 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 284 | 132.74 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 303 | 132.82 | radiation | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 350 | 132.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 358 | 132.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 406 | 133.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 432 | 133.04 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 453 | 133.07 | temperature | 25 | 14400 | < th | dose independent | sin | 14 | NA |
| 461 | 133.08 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 488 | 133.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 507 | 133.13 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 526 | 133.18 | temperature | 25 | 14400 | > th | dose independent | sin | 14 | NA |
| 528 | 133.18 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 4 |
| 644 | 133.50 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 712 | 133.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 730 | 133.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 731 | 133.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 736 | 133.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 755 | 133.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 781 | 133.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 944 | 133.92 | temperature | 30 | 1440 | < th | dose independent | sin | 18 | NA |
| 973 | 133.95 | temperature | 30 | 1440 | > th | dose independent | sin | 18 | NA |
| 980 | 133.96 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 992 | 133.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |