Os01g0206600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0206600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.19 | 0.29 | 10.2 | 0.0648 | 0.754 | 0.732 | 0.42 | -0.734 | -0.366 | 7.44 | 25.6 | 814 | -- | -- |
| 38.84 | 0.29 | 10.2 | 0.244 | 0.716 | 0.721 | 0.604 | -- | -0.275 | 7.52 | 25.95 | 879 | -- | -- |
| 38.53 | 0.289 | 10.2 | -0.008 | 0.726 | 0.747 | -- | -1.05 | -0.37 | 7.37 | 25.7 | 853 | -- | -- |
| 39.81 | 0.294 | 10.2 | 0.264 | 0.717 | 0.699 | -- | -- | -0.271 | 7.33 | 26 | 877 | -- | -- |
| 52.98 | 0.339 | 10.2 | 0.0428 | -- | 0.762 | -- | -0.817 | -0.342 | -- | 25.98 | 1293 | -- | -- |
| 53.03 | 0.341 | 10.1 | 0.475 | 0.522 | -- | 0.253 | -- | -0.0629 | 6.2 | -- | -- | -- | -- |
| 53.17 | 0.341 | 10.1 | 0.477 | 0.524 | -- | -- | -- | -0.0641 | 6.07 | -- | -- | -- | -- |
| 53.66 | 0.341 | 10.2 | 0.263 | -- | 0.711 | -- | -- | -0.291 | -- | 26.1 | 1294 | -- | -- |
| 41.39 | 0.3 | 10.2 | -- | 0.827 | 0.738 | -- | -- | -0.302 | 7.12 | 25.9 | 757 | -- | -- |
| 67.4 | 0.384 | 10.1 | 0.492 | -- | -- | -- | -- | -0.0523 | -- | -- | -- | -- | -- |
| 59.17 | 0.36 | 10.1 | -- | 0.531 | -- | -- | -- | -0.117 | 6.02 | -- | -- | -- | -- |
| 55.19 | 0.346 | 10.2 | -- | -- | 0.77 | -- | -- | -0.318 | -- | 26 | 1295 | -- | -- |
| 73.79 | 0.401 | 10.2 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 12 | 33.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 20 | 34.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 67 | 35.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 98 | 36.10 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 16 |
| 137 | 36.46 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 153 | 36.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 9 |
| 202 | 36.74 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 211 | 36.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 220 | 36.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 237 | 36.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 285 | 37.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 291 | 37.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 294 | 37.25 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 307 | 37.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 318 | 37.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 325 | 37.33 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 343 | 37.39 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 14 |
| 366 | 37.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 417 | 37.60 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 11 |
| 428 | 37.64 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 448 | 37.69 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 494 | 37.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 10 |
| 495 | 37.78 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 522 | 37.86 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 523 | 37.86 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 9 |
| 560 | 37.92 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 20 |
| 567 | 37.93 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 579 | 37.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 676 | 38.22 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 21 |
| 741 | 38.37 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 17 |
| 744 | 38.37 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 749 | 38.38 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 7 |
| 752 | 38.39 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 10 |
| 763 | 38.41 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 809 | 38.49 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 845 | 38.54 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 8 |
| 869 | 38.57 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 870 | 38.57 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 883 | 38.60 | temperature | 30 | 10 | < th | dose dependent | sin | 18 | NA |
| 914 | 38.65 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 924 | 38.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 935 | 38.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |