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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0206300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine protein kinase (CBL-interacting protein kinase 19).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0239) R2 : 0.000831
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.031 (0.0503) R2dN8 : 0.00107 R2N8 : 0.000831
σ : 0.45
deviance : 93.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.06 0.423 3.19 0.272 0.239 -0.363 0.609 0.436 -0.000435 9.5 1010 23 -- --
81.66 0.421 3.19 0.243 0.241 -0.377 0.541 -- -0.00562 9.4 1010 22 -- --
82.32 0.423 3.19 0.284 0.242 -0.362 -- 0.328 -0.00104 9.04 1010 22 -- --
82.67 0.423 3.19 0.261 0.244 -0.372 -- -- -0.0057 8.91 1010 22 -- --
85.63 0.431 3.2 0.29 -- -0.411 -- 0.335 0.00175 -- 1010 22 -- --
85.93 0.435 3.19 0.224 0.283 -- 0.514 -- -0.00594 9.33 -- -- -- --
86.83 0.436 3.19 0.241 0.285 -- -- -- -0.00616 8.92 -- -- -- --
85.99 0.432 3.2 0.264 -- -0.423 -- -- -0.00395 -- 1010 22 -- --
84.47 0.428 3.2 -- 0.256 -0.358 -- -- -0.0305 8.86 1010 22 -- --
91.49 0.447 3.2 0.241 -- -- -- -- -0.00422 -- -- -- -- --
88.37 0.44 3.2 -- 0.286 -- -- -- -0.033 8.86 -- -- -- --
87.82 0.436 3.21 -- -- -0.411 -- -- -0.0331 -- 1010 22 -- --
93.03 0.45 3.21 -- -- -- -- -- -0.031 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.64 radiation 10 10 > th dose independent rect. 6 1
27 75.64 radiation 10 10 > th dose dependent rect. 6 1
70 79.37 wind 3 10 < th dose dependent rect. 6 1
72 79.49 temperature 25 720 > th dose independent rect. 23 12
74 79.67 atmosphere 1005 10 > th dose dependent rect. 6 1
77 79.78 humidity 80 30 > th dose dependent rect. 6 1
78 79.86 temperature 25 1440 > th dose independent rect. 8 1
79 79.87 temperature 25 720 > th dose independent sin 7 NA
80 79.87 radiation 10 10 < th dose dependent rect. 6 1
83 80.00 temperature 15 10 > th dose dependent rect. 8 22
86 80.06 temperature 25 720 > th dose dependent rect. 22 11
89 80.10 atmosphere 1010 1440 > th dose independent rect. 8 1
91 80.10 temperature 25 1440 > th dose dependent rect. 24 9
92 80.11 temperature 30 30 < th dose dependent rect. 6 1
94 80.12 temperature 25 720 < th dose independent sin 7 NA
103 80.22 wind 1 10 < th dose independent rect. 6 1
105 80.31 atmosphere 1010 10 < th dose independent rect. 8 23
112 80.36 atmosphere 1010 1440 < th dose independent rect. 8 1
114 80.38 temperature 25 720 < th dose independent rect. 22 16
115 80.39 temperature 30 1440 < th dose dependent rect. 8 1
121 80.45 temperature 25 1440 > th dose dependent rect. 8 1
125 80.47 temperature 15 1440 > th dose dependent rect. 8 1
127 80.47 humidity 90 14400 > th dose dependent rect. 19 11
131 80.49 temperature 25 270 < th dose independent rect. 3 11
137 80.52 temperature 25 1440 > th dose independent rect. 4 5
139 80.53 temperature 25 1440 < th dose independent rect. 7 1
171 80.60 humidity 90 14400 > th dose independent rect. 19 11
180 80.61 humidity 90 14400 > th dose dependent sin 11 NA
190 80.62 humidity 90 14400 > th dose dependent rect. 3 7
201 80.64 wind 1 10 < th dose independent rect. 6 3
209 80.64 temperature 10 720 > th dose dependent rect. 21 22
216 80.66 humidity 90 14400 > th dose dependent rect. 4 4
251 80.70 temperature 15 720 > th dose dependent rect. 23 21
271 80.73 humidity 90 14400 < th dose independent rect. 18 12
277 80.74 temperature 25 720 < th dose independent rect. 22 13
308 80.77 humidity 90 14400 > th dose dependent rect. 21 5
338 80.80 atmosphere 1010 10 < th dose independent rect. 23 23
348 80.81 temperature 25 90 < th dose independent rect. 6 1
397 80.86 humidity 90 14400 > th dose independent sin 11 NA
453 80.90 humidity 90 14400 > th dose independent rect. 21 4
461 80.90 humidity 90 14400 > th dose dependent no NA NA
477 80.91 humidity 90 14400 > th dose dependent rect. 24 23
549 80.97 humidity 90 14400 > th dose independent rect. 2 6
550 80.97 humidity 90 14400 < th dose independent rect. 19 6
565 80.98 humidity 90 14400 < th dose independent sin 12 NA
597 81.00 temperature 25 1440 < th dose independent rect. 4 5
635 81.02 humidity 90 14400 < th dose independent rect. 22 1
648 81.03 humidity 90 14400 > th dose independent rect. 2 8
682 81.04 humidity 90 14400 > th dose independent rect. 9 21
721 81.07 atmosphere 1010 10 < th dose independent sin 5 NA
759 81.09 humidity 90 14400 > th dose independent rect. 22 1
776 81.10 humidity 90 14400 > th dose independent rect. 5 1
792 81.10 temperature 15 720 > th dose dependent rect. 17 22
793 81.10 temperature 30 720 < th dose dependent rect. 12 22
815 81.12 humidity 90 14400 > th dose independent rect. 4 3
822 81.12 humidity 90 14400 < th dose independent rect. 9 21
861 81.14 temperature 30 720 < th dose dependent rect. 15 19
902 81.16 temperature 30 720 < th dose dependent rect. 17 17
904 81.16 temperature 30 720 < th dose dependent rect. 18 20
938 81.18 temperature 20 720 > th dose dependent sin 7 NA