Os01g0205900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Class III peroxidase GvPx2b (Fragment).
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Os01g0205900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Class III peroxidase GvPx2b (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.74 | 0.729 | 3.06 | 0.386 | 0.108 | 2.62 | 1.06 | -2.61 | 0.0434 | 12.9 | 19.08 | 1682 | -- | -- |
| 240.93 | 0.723 | 3.1 | 0.282 | 0.06 | 3.39 | 1.25 | -- | 0.00835 | 12.8 | 18.27 | 1970 | -- | -- |
| 245.36 | 0.73 | 3.06 | 0.435 | 0.112 | 2.68 | -- | -2.59 | 0.0541 | 11.8 | 19.07 | 1698 | -- | -- |
| 246.85 | 0.732 | 3.09 | 0.337 | 0.0784 | 3.58 | -- | -- | 0.0226 | 12.7 | 18.39 | 1876 | -- | -- |
| 246.12 | 0.731 | 3.06 | 0.43 | -- | 2.69 | -- | -2.52 | 0.051 | -- | 19.07 | 1704 | -- | -- |
| 300.81 | 0.813 | 3.15 | -0.36 | 0.0915 | -- | 1.26 | -- | -0.215 | 12.3 | -- | -- | -- | -- |
| 307.68 | 0.821 | 3.15 | -0.311 | 0.0882 | -- | -- | -- | -0.209 | 12.8 | -- | -- | -- | -- |
| 247.24 | 0.732 | 3.09 | 0.336 | -- | 3.58 | -- | -- | 0.0208 | -- | 18.37 | 1881 | -- | -- |
| 249.13 | 0.735 | 3.11 | -- | 0.0847 | 3.42 | -- | -- | -0.0355 | 12.2 | 18.2 | 1841 | -- | -- |
| 308.17 | 0.82 | 3.15 | -0.314 | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
| 310.23 | 0.824 | 3.14 | -- | 0.0931 | -- | -- | -- | -0.174 | 12.9 | -- | -- | -- | -- |
| 249.57 | 0.736 | 3.11 | -- | -- | 3.41 | -- | -- | -0.037 | -- | 18.18 | 1851 | -- | -- |
| 310.77 | 0.823 | 3.14 | -- | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.58 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 36 | 233.83 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 57 | 234.41 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 79 | 234.47 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 81 | 234.53 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 98 | 235.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 99 | 235.48 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 106 | 235.61 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 156 | 236.77 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 232 | 237.88 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 235 | 237.91 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 251 | 238.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 252 | 238.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 403 | 239.77 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 417 | 239.89 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 425 | 239.93 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 22 |
| 584 | 240.97 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 585 | 240.97 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 587 | 240.98 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 648 | 241.33 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 650 | 241.33 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 659 | 241.39 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 16 |
| 661 | 241.41 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 680 | 241.53 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 715 | 241.73 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 855 | 241.83 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 888 | 241.97 | temperature | 20.0 | 1440 | < th | dose dependent | no | NA | NA |
| 937 | 242.28 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 19 | NA |
| 941 | 242.29 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 951 | 242.31 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 962 | 242.34 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 13 | 1 |