Os01g0205700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Shaggy-like kinase (Fragment).
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Os01g0205700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Shaggy-like kinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.55 | 0.197 | 10.3 | 0.68 | 0.389 | -0.773 | 0.0712 | 0.988 | 0.343 | 22.6 | 23.56 | 119 | -- | -- |
| 18.19 | 0.199 | 10.3 | 0.596 | 0.363 | -0.721 | 0.011 | -- | 0.342 | 22.8 | 23.08 | 94 | -- | -- |
| 17.55 | 0.195 | 10.3 | 0.671 | 0.385 | -0.766 | -- | 0.912 | 0.344 | 22.6 | 23.38 | 114 | -- | -- |
| 18 | 0.198 | 10.3 | 0.532 | 0.384 | -0.676 | -- | -- | 0.303 | 22.8 | 23.3 | 101 | -- | -- |
| 23.28 | 0.225 | 10.3 | 0.722 | -- | -0.985 | -- | 0.927 | 0.39 | -- | 23.1 | 8 | -- | -- |
| 25.69 | 0.238 | 10.4 | 0.402 | 0.541 | -- | 0.0692 | -- | 0.208 | 0.821 | -- | -- | -- | -- |
| 25.71 | 0.237 | 10.4 | 0.4 | 0.541 | -- | -- | -- | 0.208 | 0.82 | -- | -- | -- | -- |
| 23.8 | 0.227 | 10.3 | 0.576 | -- | -0.905 | -- | -- | 0.343 | -- | 22.99 | 8 | -- | -- |
| 24.92 | 0.232 | 10.4 | -- | 0.381 | -0.55 | -- | -- | 0.212 | 23.7 | 24.6 | 12 | -- | -- |
| 43.99 | 0.31 | 10.3 | 0.42 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 29.93 | 0.256 | 10.4 | -- | 0.547 | -- | -- | -- | 0.163 | 0.852 | -- | -- | -- | -- |
| 31.95 | 0.263 | 10.3 | -- | -- | -0.803 | -- | -- | 0.247 | -- | 24.1 | 3 | -- | -- |
| 48.63 | 0.326 | 10.4 | -- | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.95 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 2 | 16.99 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 7 | 17.12 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 31 | 17.41 | temperature | 10.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 44 | 17.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 51 | 17.54 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 62 | 17.63 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 81 | 17.70 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 85 | 17.71 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 88 | 17.73 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 94 | 17.75 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 21 |
| 95 | 17.76 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 15 |
| 117 | 17.83 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 129 | 17.85 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 132 | 17.85 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 207 | 17.95 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 290 | 18.09 | temperature | 10.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 407 | 18.19 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 429 | 18.23 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 462 | 18.26 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 463 | 18.27 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 484 | 18.29 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 711 | 18.53 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 812 | 18.66 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 834 | 18.68 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 858 | 18.70 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 859 | 18.70 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 862 | 18.70 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 895 | 18.72 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 955 | 18.76 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 956 | 18.77 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 957 | 18.77 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 969 | 18.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 976 | 18.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 981 | 18.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 992 | 18.80 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |