Os01g0205300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rho termination factor, N-terminal domain containing protein.
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Os01g0205300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rho termination factor, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.9 | 0.627 | 10.6 | -3.51 | 3.22 | -1.31 | 1.49 | -2.18 | -0.683 | 3.13 | 1011 | 4975 | -- | -- |
| 178.1 | 0.622 | 10.6 | -4.06 | 3.25 | -1.24 | 1.67 | -- | -0.684 | 3.18 | 1011 | 19633 | -- | -- |
| 185.1 | 0.634 | 10.6 | -3.49 | 3.23 | -1.31 | -- | -2.31 | -0.676 | 3.09 | 1011 | 4866 | -- | -- |
| 185.26 | 0.634 | 10.6 | -4.14 | 3.27 | -1.2 | -- | -- | -0.739 | 3.11 | 1011 | 19805 | -- | -- |
| 770.36 | 1.29 | 10.6 | -3.24 | -- | -1.3 | -- | -2.47 | -0.655 | -- | 1010 | 9857 | -- | -- |
| 227.69 | 0.707 | 10.6 | -3.72 | 3.27 | -- | 1.59 | -- | -0.519 | 3.15 | -- | -- | -- | -- |
| 235.85 | 0.719 | 10.6 | -3.75 | 3.28 | -- | -- | -- | -0.528 | 3.09 | -- | -- | -- | -- |
| 783.17 | 1.3 | 10.6 | -4.11 | -- | -1.26 | -- | -- | -0.749 | -- | 1011 | 21003 | -- | -- |
| 601.42 | 1.15 | 10.5 | -- | 3.2 | -0.407 | -- | -- | -0.107 | 3.14 | 1010 | 15125 | -- | -- |
| 848.53 | 1.36 | 10.6 | -3.61 | -- | -- | -- | -- | -0.442 | -- | -- | -- | -- | -- |
| 606.38 | 1.15 | 10.5 | -- | 3.2 | -- | -- | -- | -0.11 | 3.09 | -- | -- | -- | -- |
| 1181.98 | 1.61 | 10.5 | -- | -- | -0.722 | -- | -- | -0.0841 | -- | 1011 | 21003 | -- | -- |
| 1192.29 | 1.61 | 10.5 | -- | -- | -- | -- | -- | -0.0416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.35 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 2 | 168.40 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 24 | 169.09 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 38 | 169.41 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 46 | 169.47 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 74 | 169.75 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 101 | 170.02 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 106 | 170.11 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 135 | 170.40 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 155 | 170.62 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 169 | 170.76 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 181 | 170.86 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 187 | 170.90 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 190 | 170.93 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 239 | 171.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 328 | 171.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 430 | 172.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 501 | 172.35 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 594 | 172.65 | atmosphere | 1015.0 | 14400 | > th | dose dependent | no | NA | NA |
| 644 | 172.76 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 646 | 172.77 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 650 | 172.77 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 659 | 172.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 677 | 172.85 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 708 | 172.92 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 747 | 172.98 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 756 | 173.00 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 781 | 173.05 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 782 | 173.05 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 795 | 173.08 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 931 | 173.31 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 963 | 173.38 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 981 | 173.42 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 990 | 173.44 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 994 | 173.45 | temperature | 30.0 | 720 | < th | dose dependent | sin | 12 | NA |