Os01g0205200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0205200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.15 | 0.616 | 10.9 | 0.557 | 2.18 | -1.16 | -0.656 | 1.42 | -0.529 | 20.1 | 20.1 | 60 | -- | -- |
| 182.2 | 0.629 | 10.9 | 0.423 | 2.18 | -1.21 | -0.685 | -- | -0.547 | 20 | 20.3 | 59 | -- | -- |
| 173.22 | 0.613 | 10.9 | 0.591 | 2.18 | -1.16 | -- | 1.46 | -0.525 | 20.1 | 20.26 | 59 | -- | -- |
| 183.86 | 0.632 | 10.9 | 0.348 | 2.17 | -1.23 | -- | -- | -0.567 | 20.1 | 20.4 | 58 | -- | -- |
| 430.63 | 0.967 | 10.8 | 0.631 | -- | -1.35 | -- | 1.49 | -0.513 | -- | 20.4 | 45 | -- | -- |
| 241.62 | 0.729 | 11 | -0.0179 | 2.25 | -- | -0.991 | -- | -0.808 | 20.5 | -- | -- | -- | -- |
| 244.79 | 0.733 | 11 | 0.0138 | 2.25 | -- | -- | -- | -0.808 | 20.5 | -- | -- | -- | -- |
| 440.03 | 0.977 | 10.8 | 0.375 | -- | -1.42 | -- | -- | -0.567 | -- | 20.39 | 33 | -- | -- |
| 186.81 | 0.637 | 10.9 | -- | 2.18 | -1.18 | -- | -- | -0.624 | 20.1 | 20.31 | 59 | -- | -- |
| 529.94 | 1.08 | 10.9 | 0.00501 | -- | -- | -- | -- | -0.829 | -- | -- | -- | -- | -- |
| 244.79 | 0.732 | 11 | -- | 2.25 | -- | -- | -- | -0.81 | 20.5 | -- | -- | -- | -- |
| 438.95 | 0.979 | 10.9 | -- | -- | -1.32 | -- | -- | -0.594 | -- | 20.8 | 11 | -- | -- |
| 529.94 | 1.07 | 10.9 | -- | -- | -- | -- | -- | -0.83 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.93 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 23 |
| 2 | 171.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 3 | 171.87 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 22 |
| 14 | 172.86 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 23 |
| 17 | 173.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 22 | 173.80 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 23 | 173.81 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 31 | 174.40 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 23 |
| 34 | 174.50 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 35 | 174.56 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 36 | 174.57 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 43 | 174.84 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 23 |
| 47 | 174.92 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 16 |
| 50 | 175.07 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 64 | 175.32 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 65 | 175.33 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 67 | 175.36 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 19 |
| 80 | 175.48 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 94 | 176.07 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 21 |
| 125 | 176.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 165 | 177.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 180 | 178.03 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 189 | 178.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 195 | 178.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 198 | 178.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 200 | 178.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 201 | 178.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 214 | 178.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 218 | 178.55 | temperature | 20 | 30 | > th | dose independent | sin | 7 | NA |
| 228 | 178.87 | temperature | 20 | 30 | < th | dose independent | sin | 7 | NA |
| 238 | 179.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 276 | 179.81 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 277 | 179.84 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 16 |
| 309 | 180.25 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 322 | 180.54 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 17 |
| 378 | 181.28 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 403 | 181.68 | temperature | 25 | 10 | < th | dose dependent | sin | 8 | NA |
| 462 | 182.61 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 13 |
| 544 | 183.68 | temperature | 15 | 10 | > th | dose dependent | sin | 9 | NA |
| 564 | 183.96 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 565 | 183.97 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 17 |
| 770 | 186.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 872 | 187.48 | humidity | 50 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 881 | 187.57 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 23 |
| 905 | 187.82 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 937 | 188.10 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 13 |
| 961 | 188.35 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 971 | 188.49 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 980 | 188.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 982 | 188.56 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 986 | 188.63 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 1000 | 188.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 8 |