Os01g0204900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0204900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.14 | 0.446 | 2.76 | -0.0561 | 0.144 | 0.232 | 0.0757 | 0.728 | 0.11 | 4.58 | 1015 | 4823 | -- | -- |
| 90.53 | 0.443 | 2.74 | 0.17 | 0.156 | 0.326 | 0.00825 | -- | 0.168 | 4.48 | 1014 | 6483 | -- | -- |
| 90.15 | 0.442 | 2.76 | -0.0546 | 0.145 | 0.235 | -- | 0.721 | 0.11 | 4.66 | 1015 | 4816 | -- | -- |
| 90.5 | 0.443 | 2.74 | 0.197 | 0.145 | 0.338 | -- | -- | 0.179 | 4.62 | 1014 | 6805 | -- | -- |
| 91.26 | 0.445 | 2.76 | -0.0528 | -- | 0.23 | -- | 0.73 | 0.11 | -- | 1015 | 4816 | -- | -- |
| 95.42 | 0.458 | 2.76 | 0.0791 | 0.14 | -- | 0.0715 | -- | 0.102 | 4.46 | -- | -- | -- | -- |
| 95.43 | 0.457 | 2.76 | 0.0786 | 0.141 | -- | -- | -- | 0.102 | 4.55 | -- | -- | -- | -- |
| 91.63 | 0.446 | 2.74 | 0.202 | -- | 0.334 | -- | -- | 0.182 | -- | 1014 | 6805 | -- | -- |
| 91.36 | 0.445 | 2.75 | -- | 0.149 | 0.307 | -- | -- | 0.149 | 4.54 | 1014 | 6469 | -- | -- |
| 96.49 | 0.459 | 2.76 | 0.0841 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 95.6 | 0.457 | 2.76 | -- | 0.143 | -- | -- | -- | 0.0928 | 4.54 | -- | -- | -- | -- |
| 92.56 | 0.448 | 2.75 | -- | -- | 0.303 | -- | -- | 0.152 | -- | 1014 | 6459 | -- | -- |
| 96.68 | 0.459 | 2.76 | -- | -- | -- | -- | -- | 0.096 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.59 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 2 | 83.25 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 4 | 83.95 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 1 | 2 |
| 5 | 83.95 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 1 | 2 |
| 8 | 83.98 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 1 | 1 |
| 18 | 83.98 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 69 | 85.03 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 7 | 19 |
| 73 | 85.03 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 77 | 85.36 | temperature | 20.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 78 | 85.37 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 82 | 85.37 | wind | 1.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 89 | 85.44 | wind | 1.0 | 90 | < th | dose dependent | rect. | 21 | 1 |
| 98 | 85.46 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 1 |
| 193 | 86.58 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 219 | 86.58 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 245 | 86.63 | temperature | 20.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 259 | 86.86 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 261 | 86.90 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 24 | 3 |
| 294 | 87.62 | wind | 1.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 296 | 87.71 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 322 | 88.33 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 7 | 11 |
| 326 | 88.33 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 330 | 88.36 | wind | 3.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 368 | 88.76 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 384 | 88.91 | temperature | 20.0 | 720 | < th | dose independent | rect. | 15 | 1 |
| 390 | 88.94 | wind | 1.0 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 395 | 88.99 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 400 | 89.03 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 402 | 89.03 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 404 | 89.04 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 407 | 89.04 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 423 | 89.12 | wind | 1.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 461 | 89.31 | wind | 3.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 466 | 89.34 | wind | 3.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 472 | 89.37 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 486 | 89.44 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 2 | 8 |
| 582 | 89.62 | wind | 1.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 596 | 89.64 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 7 |
| 635 | 89.70 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 665 | 89.73 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 667 | 89.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 2 | 1 |
| 671 | 89.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 691 | 89.77 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 1 | NA |
| 695 | 89.78 | temperature | 10.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 697 | 89.78 | temperature | 30.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 698 | 89.78 | humidity | 50.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 702 | 89.78 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 704 | 89.78 | radiation | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 713 | 89.78 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 715 | 89.78 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 722 | 89.79 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 10 |
| 730 | 89.81 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 2 |
| 740 | 89.82 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 755 | 89.83 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 780 | 89.87 | wind | 7.0 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 840 | 89.91 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 843 | 89.92 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 1 | NA |
| 844 | 89.92 | humidity | 90.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 873 | 89.94 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 876 | 89.95 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 1 | NA |
| 898 | 89.98 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 936 | 90.02 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 958 | 90.05 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 3 |
| 973 | 90.06 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 985 | 90.08 | wind | 5.0 | 4320 | > th | dose independent | rect. | 22 | 3 |