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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0203400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.29 (0.0697) R2 : 0.533
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.19 (0.232) R2dC : 1.01 R2C : 0.197
β3 : 3.42 (0.266) R2dE : 0.331 R2E : -0.481
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.203 (0.146) R2dN8 : 0.00249 R2N8 : 0.00227
σ : 1.3
deviance : 784.06
__
_____
C
peak time of C : 23.7
E
wheather : humidity
threshold : 38.07
memory length : 52
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.41
open length of G : 14.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
749.96 1.29 6.29 0.591 4.93 3.31 0.232 3.22 0.252 23.6 45.64 75 5.2 14.3
763.71 1.29 6.28 0.642 5.06 3.42 -1.38 -- 0.25 23.7 42.39 53 5.41 14.3
747.57 1.27 6.3 0.569 5.04 3.43 -- 3.14 0.246 23.6 42.41 61 5.34 14.3
773.25 1.3 6.27 0.637 5.1 3.37 -- -- 0.267 23.7 40.11 52 5.4 14.3
1107.04 1.55 6.32 0.623 -- 2.89 -- -4.77 0.29 -- 3.635 794 6.47 17.3
1044.08 1.51 6.22 0.473 3.11 -- -1.28 -- 0.392 23.3 -- -- -- --
1051.07 1.52 6.21 0.525 3.12 -- -- -- 0.397 23.3 -- -- -- --
906.65 1.4 6.2 0.829 -- 5.26 -- -- 0.473 -- 18.7 766 7.47 16.8
784.06 1.3 6.29 -- 5.19 3.42 -- -- 0.203 23.7 38.07 52 5.41 14.3
1660.52 1.9 6.14 0.604 -- -- -- -- 0.427 -- -- -- -- --
1058.34 1.52 6.23 -- 3.13 -- -- -- 0.339 23.3 -- -- -- --
920.03 1.41 6.17 -- -- 5.38 -- -- 0.399 -- 18.66 757 7.47 16.9
1670.13 1.91 6.15 -- -- -- -- -- 0.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 764.15 humidity 50.0 90 > th dose dependent rect. 5 14
8 790.34 humidity 60.0 90 > th dose dependent rect. 5 12
10 790.97 humidity 50.0 90 > th dose dependent rect. 5 6
11 791.66 humidity 80.0 270 > th dose independent rect. 4 15
14 793.98 humidity 80.0 270 > th dose independent rect. 4 5
20 798.08 humidity 60.0 90 > th dose dependent rect. 5 18
33 803.28 humidity 60.0 90 > th dose dependent rect. 5 10
80 820.47 humidity 60.0 90 > th dose dependent rect. 5 21
90 822.11 humidity 70.0 270 > th dose dependent rect. 3 20
101 824.42 humidity 50.0 270 > th dose dependent rect. 3 8
132 829.33 wind 3.0 90 < th dose independent rect. 5 6
150 832.79 wind 5.0 90 < th dose dependent rect. 5 6
174 837.51 radiation 20.0 30 < th dose dependent rect. 5 21
207 842.80 precipitation 0.1 270 < th dose independent rect. 6 23
209 842.80 precipitation 0.1 270 < th dose dependent rect. 6 23
213 843.21 humidity 80.0 270 < th dose independent rect. 4 11
218 843.68 humidity 70.0 1440 > th dose independent rect. 18 20
219 843.98 radiation 40.0 90 < th dose independent rect. 5 6
222 844.04 humidity 70.0 1440 > th dose independent rect. 19 18
229 844.50 radiation 20.0 270 < th dose dependent rect. 4 14
232 844.71 radiation 40.0 4320 < th dose dependent rect. 21 8
238 845.03 humidity 80.0 270 > th dose dependent rect. 5 1
248 846.62 humidity 70.0 1440 < th dose independent rect. 18 20
256 847.60 radiation 40.0 90 < th dose dependent rect. 5 6
257 847.81 wind 9.0 90 < th dose dependent rect. 5 15
260 847.96 humidity 90.0 270 < th dose dependent rect. 19 20
275 849.21 precipitation 0.1 90 < th dose independent rect. 11 18
276 849.21 precipitation 0.1 90 < th dose dependent rect. 11 18
283 849.47 radiation 20.0 90 < th dose independent rect. 5 21
290 849.69 radiation 40.0 270 < th dose dependent rect. 4 14
299 850.32 humidity 80.0 1440 < th dose dependent rect. 19 17
320 851.73 humidity 80.0 1440 < th dose dependent sin 8 NA
331 852.40 atmosphere 1010.0 90 < th dose independent rect. 5 6
333 852.47 humidity 80.0 720 < th dose dependent rect. 17 17
353 853.11 humidity 70.0 720 < th dose independent rect. 19 13
361 853.76 humidity 70.0 720 > th dose independent rect. 18 15
363 853.97 temperature 20.0 270 > th dose independent rect. 5 2
364 854.00 humidity 80.0 270 > th dose independent sin 2 NA
373 854.61 humidity 90.0 270 < th dose dependent rect. 3 12
425 857.08 wind 5.0 90 < th dose independent rect. 20 9
427 857.10 temperature 10.0 90 > th dose dependent rect. 11 18
434 857.55 humidity 70.0 720 > th dose independent sin 11 NA
441 858.19 temperature 10.0 270 > th dose dependent rect. 5 1
450 858.47 humidity 70.0 720 < th dose independent sin 11 NA
456 858.71 humidity 70.0 1440 > th dose independent rect. 9 4
489 859.99 temperature 10.0 90 > th dose dependent rect. 21 8
491 860.09 temperature 25.0 720 > th dose dependent rect. 17 6
492 860.11 radiation 10.0 270 < th dose dependent rect. 5 1
506 861.23 temperature 20.0 270 > th dose independent rect. 4 4
513 861.46 humidity 70.0 720 < th dose independent rect. 17 16
516 861.56 temperature 10.0 270 > th dose dependent rect. 4 4
522 861.68 humidity 90.0 720 < th dose dependent rect. 17 7
524 861.78 precipitation 0.1 90 < th dose independent rect. 9 20
525 861.78 precipitation 0.1 90 < th dose dependent rect. 9 20
539 862.27 humidity 90.0 270 < th dose dependent rect. 7 8
543 862.32 humidity 70.0 270 > th dose dependent sin 1 NA
552 862.58 humidity 70.0 1440 > th dose independent sin 9 NA
554 862.64 wind 9.0 90 < th dose dependent rect. 20 9
558 862.84 wind 3.0 90 < th dose independent rect. 5 4
567 863.08 humidity 70.0 1440 < th dose independent rect. 10 2
589 863.77 humidity 70.0 10 > th dose independent rect. 5 21
595 863.96 humidity 80.0 270 < th dose independent sin 2 NA
602 864.06 humidity 70.0 1440 < th dose independent rect. 9 5
614 864.40 humidity 80.0 720 < th dose dependent sin 11 NA
617 864.53 wind 7.0 90 < th dose independent rect. 5 6
620 864.68 humidity 70.0 1440 < th dose independent sin 9 NA
623 864.74 humidity 70.0 720 < th dose dependent rect. 19 13
626 864.80 humidity 80.0 1440 < th dose dependent rect. 23 15
642 865.24 humidity 70.0 1440 > th dose independent rect. 5 9
644 865.32 humidity 70.0 10 > th dose independent rect. 5 19
658 865.58 temperature 15.0 90 > th dose independent rect. 5 6
666 865.71 precipitation 0.1 90 < th dose independent rect. 20 9
667 865.71 precipitation 0.1 90 < th dose dependent rect. 20 9
668 865.77 radiation 10.0 270 < th dose independent rect. 5 1
678 866.00 humidity 70.0 1440 > th dose independent rect. 22 16
684 866.22 temperature 10.0 90 > th dose dependent rect. 9 20
693 866.44 wind 1.0 270 > th dose independent rect. 8 20
721 867.24 precipitation 0.1 270 < th dose independent rect. 9 18
722 867.24 precipitation 0.1 270 < th dose dependent rect. 9 18
746 867.81 radiation 40.0 4320 < th dose dependent rect. 3 2
778 868.51 atmosphere 995.0 90 > th dose independent rect. 5 15
815 869.00 atmosphere 995.0 90 > th dose independent rect. 5 6
817 869.00 temperature 10.0 90 > th dose independent rect. 11 18
830 869.27 radiation 10.0 270 < th dose independent rect. 4 14
831 869.27 humidity 70.0 1440 > th dose independent rect. 9 23
832 869.29 radiation 40.0 4320 < th dose dependent rect. 1 4
871 870.05 humidity 70.0 1440 < th dose independent rect. 9 23
880 870.21 radiation 20.0 10 < th dose dependent sin 19 NA
894 870.42 precipitation 0.1 90 < th dose independent rect. 5 6
895 870.42 precipitation 0.1 90 < th dose dependent rect. 5 6
897 870.46 humidity 70.0 1440 < th dose independent rect. 6 8
916 870.53 humidity 70.0 1440 < th dose independent rect. 13 23
919 870.56 wind 1.0 90 > th dose independent rect. 11 17
920 870.60 wind 1.0 270 > th dose independent rect. 9 18
926 870.73 humidity 70.0 1440 > th dose independent rect. 9 12
929 870.74 humidity 70.0 1440 > th dose independent rect. 9 14
946 870.92 wind 3.0 30 < th dose dependent rect. 2 3
948 870.94 humidity 70.0 1440 > th dose independent rect. 13 23
979 871.43 temperature 10.0 270 > th dose dependent rect. 3 6
984 871.50 humidity 70.0 1440 < th dose independent rect. 9 11
997 871.53 temperature 25.0 720 > th dose dependent rect. 19 4