Os01g0202800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NOD26-like membrane integral protein ZmNIP1-1.
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Os01g0202800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NOD26-like membrane integral protein ZmNIP1-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.86 | 0.348 | 10.9 | -0.169 | 0.471 | -1.2 | 0.69 | -0.839 | 0.484 | 2.66 | 21.68 | 7 | -- | -- |
| 55.46 | 0.35 | 10.9 | -0.23 | 0.456 | -1.02 | 0.488 | -- | 0.475 | 2.77 | 21.68 | 7 | -- | -- |
| 56.17 | 0.352 | 10.9 | -0.222 | 0.466 | -1.08 | -- | -0.297 | 0.474 | 2.91 | 21.68 | 7 | -- | -- |
| 56.26 | 0.352 | 10.9 | -0.241 | 0.46 | -1.02 | -- | -- | 0.472 | 2.92 | 21.68 | 7 | -- | -- |
| 67.55 | 0.385 | 10.9 | -0.184 | -- | -0.852 | -- | 0.0264 | 0.515 | -- | 20.81 | 9 | -- | -- |
| 65.56 | 0.38 | 10.9 | -0.0505 | 0.355 | -- | 0.488 | -- | 0.574 | 3.17 | -- | -- | -- | -- |
| 66.27 | 0.381 | 10.9 | -0.0605 | 0.361 | -- | -- | -- | 0.571 | 3.52 | -- | -- | -- | -- |
| 67.51 | 0.384 | 10.9 | -0.18 | -- | -0.825 | -- | -- | 0.513 | -- | 21.1 | 3 | -- | -- |
| 57.67 | 0.354 | 10.9 | -- | 0.451 | -0.867 | -- | -- | 0.501 | 2.92 | 22.2 | 5 | -- | -- |
| 73.57 | 0.401 | 10.9 | -0.0453 | -- | -- | -- | -- | 0.58 | -- | -- | -- | -- | -- |
| 66.37 | 0.381 | 10.9 | -- | 0.36 | -- | -- | -- | 0.578 | 3.52 | -- | -- | -- | -- |
| 68.3 | 0.386 | 10.9 | -- | -- | -0.744 | -- | -- | 0.538 | -- | 21.1 | 3 | -- | -- |
| 73.62 | 0.401 | 10.9 | -- | -- | -- | -- | -- | 0.585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.26 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 7 | 55.29 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 15 | 55.31 | temperature | 20.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 26 | 55.34 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 27 | 55.36 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 70 | 55.52 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 96 | 55.65 | temperature | 20.0 | 30 | > th | dose independent | sin | 10 | NA |
| 160 | 55.75 | temperature | 20.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 167 | 55.76 | temperature | 20.0 | 30 | < th | dose independent | rect. | 17 | 13 |
| 176 | 55.80 | temperature | 20.0 | 30 | < th | dose independent | sin | 10 | NA |
| 190 | 55.87 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 13 |
| 208 | 55.91 | temperature | 25.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 218 | 55.96 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 223 | 55.98 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 232 | 56.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 244 | 56.05 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 8 |
| 281 | 56.14 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 284 | 56.14 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 297 | 56.20 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 299 | 56.20 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 325 | 56.28 | temperature | 20.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 369 | 56.37 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 372 | 56.37 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 377 | 56.37 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 9 | 22 |
| 380 | 56.37 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 381 | 56.38 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 397 | 56.39 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 404 | 56.40 | temperature | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 405 | 56.40 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 429 | 56.42 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 431 | 56.42 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 438 | 56.44 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 526 | 56.52 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 527 | 56.53 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 625 | 56.63 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 775 | 56.81 | temperature | 20.0 | 30 | < th | dose independent | rect. | 12 | 18 |
| 896 | 56.91 | temperature | 20.0 | 30 | < th | dose independent | rect. | 10 | 21 |
| 973 | 56.98 | temperature | 20.0 | 30 | < th | dose independent | rect. | 22 | 22 |
| 975 | 56.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 11 |