Os01g0199400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alpha/beta hydrolase family protein.
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Os01g0199400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alpha/beta hydrolase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.26 | 0.468 | 12.3 | -0.15 | 3.41 | 0.632 | 2.1 | 0.912 | -0.0355 | 5.97 | 27.5 | 228 | -- | -- |
| 100.31 | 0.466 | 12.3 | 0.0186 | 3.4 | 0.634 | 2.41 | -- | 0.0276 | 5.98 | 26.81 | 213 | -- | -- |
| 108.56 | 0.485 | 12.3 | -0.219 | 3.36 | 0.68 | -- | 1.7 | -0.0369 | 5.98 | 27.5 | 250 | -- | -- |
| 113.63 | 0.496 | 12.3 | 0.0615 | 3.35 | 0.753 | -- | -- | 0.0391 | 6 | 27.53 | 241 | -- | -- |
| 419.31 | 0.954 | 12.2 | 0.309 | -- | 2.7 | -- | 0.99 | 0.67 | -- | 26.4 | 357 | -- | -- |
| 117.6 | 0.508 | 12.3 | -0.158 | 3.84 | -- | 2.67 | -- | -0.101 | 5.77 | -- | -- | -- | -- |
| 135.15 | 0.544 | 12.3 | -0.142 | 3.86 | -- | -- | -- | -0.112 | 5.76 | -- | -- | -- | -- |
| 418.79 | 0.953 | 12.2 | 0.69 | -- | 2.74 | -- | -- | 0.714 | -- | 26.39 | 359 | -- | -- |
| 113.54 | 0.496 | 12.3 | -- | 3.33 | 0.777 | -- | -- | 0.0203 | 5.95 | 27.57 | 278 | -- | -- |
| 906.92 | 1.41 | 12.4 | -0.0214 | -- | -- | -- | -- | -0.0206 | -- | -- | -- | -- | -- |
| 135.68 | 0.545 | 12.3 | -- | 3.86 | -- | -- | -- | -0.0959 | 5.76 | -- | -- | -- | -- |
| 430.96 | 0.967 | 12.3 | -- | -- | 3.16 | -- | -- | 0.33 | -- | 28.13 | 445 | -- | -- |
| 906.93 | 1.41 | 12.4 | -- | -- | -- | -- | -- | -0.0183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 8 | 92.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 9 | 92.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 18 | 93.32 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 13 |
| 22 | 93.92 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 3 |
| 29 | 94.67 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 13 |
| 32 | 94.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 37 | 95.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 47 | 95.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 3 |
| 66 | 95.90 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 68 | 95.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 85 | 96.40 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 13 |
| 89 | 96.43 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 98 | 96.57 | temperature | 25 | 270 | > th | dose independent | sin | 21 | NA |
| 100 | 96.57 | temperature | 25 | 270 | < th | dose independent | sin | 21 | NA |
| 116 | 96.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 121 | 96.91 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 4 |
| 127 | 97.04 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 194 | 97.77 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 1 |
| 209 | 97.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 215 | 97.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 247 | 98.20 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 275 | 98.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 281 | 98.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 355 | 98.76 | temperature | 25 | 720 | < th | dose independent | sin | 3 | NA |
| 368 | 98.83 | temperature | 25 | 10 | < th | dose independent | sin | 19 | NA |
| 396 | 98.93 | temperature | 25 | 10 | < th | dose independent | rect. | 11 | 13 |
| 453 | 99.10 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 21 |
| 462 | 99.13 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 483 | 99.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 495 | 99.24 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 20 |
| 518 | 99.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 533 | 99.35 | temperature | 20 | 270 | > th | dose dependent | sin | 22 | NA |
| 535 | 99.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 557 | 99.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 13 |
| 560 | 99.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 657 | 99.74 | radiation | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 699 | 99.84 | radiation | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 727 | 99.92 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 813 | 100.14 | temperature | 25 | 10 | > th | dose independent | sin | 19 | NA |
| 833 | 100.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 838 | 100.21 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 843 | 100.22 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 889 | 100.31 | radiation | 10 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 904 | 100.36 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 906 | 100.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 909 | 100.37 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 921 | 100.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 927 | 100.42 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 974 | 100.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 20 |