Os01g0197100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytochrome P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3).
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Os01g0197100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytochrome P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.91 | 0.463 | 10.3 | 0.519 | 0.87 | 3.72 | -1.63 | 8.39 | -0.912 | 0.65 | 19.96 | 4824 | -- | -- |
| 114.62 | 0.499 | 10.1 | 0.642 | 0.888 | 0.744 | -1.65 | -- | -0.896 | 0.363 | 41.5 | 3298 | -- | -- |
| 108.01 | 0.484 | 10.3 | 0.612 | 0.879 | 4.29 | -- | 9.65 | -0.926 | 0.745 | 19.57 | 4879 | -- | -- |
| 125.88 | 0.523 | 10.1 | 0.655 | 0.956 | 0.701 | -- | -- | -0.854 | 0.794 | 34.89 | 2665 | -- | -- |
| 154.69 | 0.579 | 10.3 | 0.818 | -- | 4.84 | -- | 10.6 | -0.86 | -- | 19.84 | 6040 | -- | -- |
| 123.98 | 0.522 | 10.1 | 0.328 | 0.85 | -- | -1.69 | -- | -0.997 | 0.647 | -- | -- | -- | -- |
| 136.07 | 0.546 | 10.1 | 0.391 | 0.856 | -- | -- | -- | -0.989 | 0.795 | -- | -- | -- | -- |
| 160.68 | 0.593 | 10 | 0.673 | -- | 1.18 | -- | -- | -0.8 | -- | 23.66 | 1753 | -- | -- |
| 135.78 | 0.543 | 10.1 | -- | 0.928 | 0.445 | -- | -- | -0.954 | 0.841 | 35.03 | 2637 | -- | -- |
| 181.82 | 0.63 | 10.1 | 0.422 | -- | -- | -- | -- | -0.973 | -- | -- | -- | -- | -- |
| 140.1 | 0.554 | 10.1 | -- | 0.862 | -- | -- | -- | -1.03 | 0.816 | -- | -- | -- | -- |
| 168.14 | 0.606 | 10.1 | -- | -- | 0.919 | -- | -- | -0.859 | -- | 28.5 | 1697 | -- | -- |
| 186.53 | 0.637 | 10.1 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 21 |
| 2 | 86.61 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 22 |
| 3 | 86.64 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 20 | 87.63 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 21 | 87.64 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 22 | 87.69 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 23 | 87.71 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 24 | 87.73 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 25 | 87.74 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 37 | 87.83 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 67 | 88.17 | wind | 1 | 14400 | < th | dose dependent | rect. | 15 | 22 |
| 74 | 88.21 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 103 | 88.41 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 128 | 88.52 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 147 | 88.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 154 | 88.64 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 168 | 88.68 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 171 | 88.69 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 177 | 88.71 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 178 | 88.72 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 13 | NA |
| 187 | 88.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 198 | 88.77 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 201 | 88.78 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 21 |
| 211 | 88.80 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 223 | 88.84 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 231 | 88.85 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 232 | 88.85 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 241 | 88.87 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 12 | NA |
| 245 | 88.87 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 21 |
| 250 | 88.88 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 289 | 88.95 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 311 | 88.98 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 331 | 89.01 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 395 | 89.10 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 406 | 89.11 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 416 | 89.13 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 451 | 89.16 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 459 | 89.16 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 461 | 89.17 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 502 | 89.19 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 515 | 89.20 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 532 | 89.22 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 539 | 89.22 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 557 | 89.24 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 569 | 89.24 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 574 | 89.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 15 |
| 591 | 89.26 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 595 | 89.27 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 621 | 89.30 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 625 | 89.30 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 629 | 89.30 | wind | 1 | 14400 | < th | dose dependent | sin | 13 | NA |
| 647 | 89.33 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 723 | 89.39 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 727 | 89.40 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 4 | 22 |
| 730 | 89.41 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 754 | 89.42 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 813 | 89.50 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 856 | 89.60 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 865 | 89.63 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 866 | 89.63 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 871 | 89.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 882 | 89.65 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 905 | 89.68 | wind | 1 | 14400 | > th | dose independent | sin | 1 | NA |
| 911 | 89.69 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 921 | 89.70 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 12 |
| 922 | 89.70 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 932 | 89.72 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 955 | 89.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 984 | 89.79 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 2 |