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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0195400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 1.72 (0.379) R2 : 0.558
β1 : 22.6 (3.5) R2dD : 8.74 R2D : -13.4
β2 : 1.65 (0.185) R2dC : 0.0889 R2C : -1.92
β3 : -26.4 (3.76) R2dE : 17.4 R2E : -22.5
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 268 (35.4) R2dD*E : 30.2 R2D*E : -21.6
γ1 : -0.626 (0.144) R2dN8 : 0.0254 R2N8 : -2.35
σ : 1.24
deviance : 707.96
__
_____
C
peak time of C : 5.36
E
wheather : temperature
threshold : 30.11
memory length : 828
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.68

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
707.41 1.25 1.73 22.5 1.65 -26.4 -0.55 268 -0.625 5.32 30.12 821 18 1.11
944.75 1.44 4.59 -3.61 2.44 0.445 1.14 -- -0.88 5.21 30.12 821 18 1.11
707.96 1.24 1.72 22.6 1.65 -26.4 -- 268 -0.626 5.36 30.11 828 18 1.68
784.28 1.3 4.62 -4.18 1.76 2.58 -- -- -0.698 5.69 28.56 754 18.2 1.67
841.29 1.35 1.56 24.4 -- -27.8 -- 285 -0.59 -- 30.16 834 18 4.86
945.14 1.44 4.59 -3.61 2.43 -- 1.11 -- -0.883 5.21 -- -- -- --
948.24 1.44 4.59 -3.61 2.43 -- -- -- -0.888 5.18 -- -- -- --
846.02 1.35 4.51 -3.92 -- 3.67 -- -- -0.452 -- 28.1 701 20 1.07
1128.55 1.56 4.46 -- 1.66 2.67 -- -- -0.236 5.41 28.24 696 20.2 1.03
1257.95 1.66 4.62 -3.52 -- -- -- -- -0.827 -- -- -- -- --
1291.54 1.68 4.5 -- 2.37 -- -- -- -0.486 5.23 -- -- -- --
1251.7 1.65 4.47 -- -- 3.33 -- -- -0.118 -- 28.2 703 20.1 1.28
1585.42 1.86 4.54 -- -- -- -- -- -0.436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 712.66 temperature 30.0 720 > th dose dependent rect. 18 1
30 726.51 wind 1.0 90 < th dose independent rect. 4 1
31 728.81 humidity 50.0 1440 < th dose independent rect. 16 1
32 730.25 humidity 50.0 1440 < th dose dependent rect. 16 1
33 734.32 wind 3.0 90 < th dose dependent rect. 3 2
38 745.58 humidity 80.0 720 < th dose dependent rect. 19 2
39 745.65 humidity 70.0 720 > th dose independent rect. 19 8
55 747.10 humidity 70.0 720 < th dose independent rect. 19 12
57 747.83 humidity 70.0 720 < th dose independent rect. 19 1
68 747.98 humidity 50.0 1440 > th dose independent rect. 16 1
69 749.55 wind 3.0 10 < th dose dependent rect. 3 3
72 750.77 humidity 80.0 720 < th dose dependent rect. 18 4
88 754.00 temperature 20.0 90 > th dose dependent rect. 3 3
91 754.64 temperature 25.0 90 < th dose independent rect. 4 1
92 755.76 temperature 20.0 90 > th dose independent rect. 4 1
93 756.83 temperature 15.0 90 > th dose dependent rect. 4 1
95 757.29 temperature 20.0 10 > th dose dependent rect. 3 3
105 760.76 humidity 90.0 90 > th dose independent rect. 4 1
124 762.40 humidity 90.0 90 > th dose dependent rect. 4 1
133 764.35 temperature 30.0 720 > th dose independent rect. 18 1
151 764.80 atmosphere 1015.0 90 < th dose dependent rect. 4 1
157 766.26 radiation 20.0 14400 < th dose independent rect. 3 3
161 768.06 radiation 30.0 4320 > th dose independent rect. 16 16
162 768.18 temperature 20.0 10 > th dose independent rect. 4 2
170 770.71 radiation 30.0 4320 > th dose independent rect. 7 1
188 771.11 humidity 70.0 1440 > th dose independent rect. 19 12
201 772.52 humidity 70.0 720 < th dose dependent rect. 18 14
203 772.57 humidity 70.0 1440 > th dose independent rect. 19 1
206 772.82 wind 9.0 90 < th dose independent rect. 5 23
229 774.03 wind 3.0 4320 < th dose independent rect. 8 1
243 774.63 wind 3.0 4320 > th dose independent rect. 8 1
249 775.03 humidity 60.0 14400 > th dose independent rect. 3 4
254 776.02 radiation 1.0 90 < th dose independent rect. 4 1
257 776.09 radiation 10.0 90 < th dose dependent rect. 4 1
263 776.51 precipitation 0.1 90 < th dose independent rect. 4 1
264 776.51 precipitation 0.1 90 < th dose dependent rect. 4 1
265 776.61 wind 7.0 90 < th dose independent rect. 4 1
267 776.61 temperature 10.0 90 > th dose independent rect. 4 1
270 776.61 humidity 50.0 90 > th dose independent rect. 4 1
273 776.61 atmosphere 995.0 90 > th dose independent rect. 4 1
274 776.61 atmosphere 1010.0 90 < th dose independent rect. 4 1
279 776.61 temperature 10.0 90 > th dose independent rect. 5 23
284 776.81 humidity 70.0 1440 < th dose dependent rect. 15 17
299 777.42 humidity 70.0 1440 < th dose dependent rect. 15 4
355 779.85 humidity 70.0 1440 < th dose dependent sin 13 NA
356 779.90 radiation 20.0 4320 > th dose dependent rect. 16 16
421 782.65 humidity 70.0 1440 < th dose independent sin 12 NA
447 783.60 atmosphere 1005.0 90 > th dose independent rect. 4 1
485 784.53 atmosphere 1005.0 10 > th dose independent rect. 4 2
501 785.40 radiation 20.0 4320 > th dose dependent rect. 6 2
546 786.75 humidity 60.0 10 > th dose dependent rect. 4 2
569 787.37 atmosphere 1005.0 90 > th dose independent rect. 3 3
573 787.69 radiation 30.0 4320 < th dose independent rect. 7 1
599 788.38 atmosphere 1015.0 10 < th dose dependent rect. 4 2
602 788.62 wind 9.0 10 < th dose independent rect. 6 22
610 788.94 radiation 30.0 4320 < th dose independent rect. 22 10
639 789.74 radiation 30.0 4320 < th dose independent rect. 19 13
640 789.75 wind 3.0 4320 > th dose independent rect. 6 3
641 789.76 radiation 10.0 10 < th dose independent rect. 4 2
648 790.19 humidity 90.0 10 > th dose independent rect. 4 2
649 790.23 wind 3.0 4320 < th dose independent rect. 6 3
665 790.76 radiation 10.0 1440 < th dose independent rect. 15 3
666 790.85 wind 1.0 14400 > th dose independent rect. 1 1
673 791.09 precipitation 0.1 10 < th dose independent rect. 4 2
674 791.09 precipitation 0.1 10 < th dose dependent rect. 4 2
677 791.13 radiation 30.0 4320 < th dose independent rect. 17 15
684 791.38 wind 7.0 10 < th dose independent rect. 4 2
685 791.42 humidity 60.0 1440 > th dose independent sin 13 NA
690 791.50 humidity 60.0 1440 > th dose independent rect. 15 4
694 791.56 temperature 10.0 10 > th dose independent rect. 4 2
696 791.56 temperature 30.0 10 < th dose independent rect. 4 2
697 791.56 humidity 50.0 10 > th dose independent rect. 4 2
700 791.56 atmosphere 995.0 10 > th dose independent rect. 4 2
701 791.56 atmosphere 1010.0 10 < th dose independent rect. 4 2
706 791.56 temperature 10.0 10 > th dose independent rect. 6 22
712 791.71 atmosphere 1005.0 270 > th dose independent rect. 1 4
737 792.27 humidity 60.0 1440 > th dose independent rect. 14 13
774 792.80 humidity 60.0 1440 > th dose independent rect. 14 18
794 793.48 radiation 40.0 10 < th dose dependent rect. 4 2
844 794.31 radiation 10.0 1440 > th dose independent rect. 11 22
876 794.82 radiation 10.0 1440 > th dose independent sin 13 NA
885 794.94 temperature 30.0 1440 < th dose independent rect. 18 11
894 795.10 temperature 30.0 1440 < th dose independent rect. 18 2
955 796.60 radiation 10.0 1440 < th dose independent rect. 15 12
986 796.81 radiation 10.0 1440 > th dose independent rect. 15 22