Os01g0195200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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Os01g0195200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.61 | 0.763 | 3.52 | -0.0477 | 0.542 | -0.496 | 0.0691 | -2.97 | -0.105 | 3.75 | 81.51 | 1392 | -- | -- |
| 269.81 | 0.765 | 3.52 | -0.144 | 0.535 | -0.548 | 0.527 | -- | -0.105 | 4.35 | 79 | 2640 | -- | -- |
| 263.61 | 0.756 | 3.52 | -0.0489 | 0.535 | -0.493 | -- | -2.96 | -0.104 | 3.74 | 81.69 | 1370 | -- | -- |
| 268.9 | 0.764 | 3.5 | -0.175 | 0.535 | -0.697 | -- | -- | -0.109 | 3.87 | 77.31 | 2678 | -- | -- |
| 278.59 | 0.777 | 3.52 | -0.0321 | -- | -0.671 | -- | -2.7 | -0.0953 | -- | 81.59 | 1314 | -- | -- |
| 277.06 | 0.78 | 3.51 | -0.277 | 0.593 | -- | 0.237 | -- | -0.111 | 3.81 | -- | -- | -- | -- |
| 277.2 | 0.78 | 3.52 | -0.28 | 0.593 | -- | -- | -- | -0.112 | 3.7 | -- | -- | -- | -- |
| 282.45 | 0.783 | 3.52 | -0.168 | -- | -0.873 | -- | -- | -0.114 | -- | 78.99 | 2659 | -- | -- |
| 270.61 | 0.766 | 3.51 | -- | 0.533 | -0.716 | -- | -- | -0.123 | 3.93 | 78 | 2687 | -- | -- |
| 296.67 | 0.805 | 3.52 | -0.255 | -- | -- | -- | -- | -0.0962 | -- | -- | -- | -- | -- |
| 279.27 | 0.782 | 3.51 | -- | 0.587 | -- | -- | -- | -0.0808 | 3.7 | -- | -- | -- | -- |
| 283.77 | 0.785 | 3.53 | -- | -- | -0.937 | -- | -- | -0.138 | -- | 77.68 | 2658 | -- | -- |
| 298.39 | 0.806 | 3.51 | -- | -- | -- | -- | -- | -0.0679 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.54 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 5 | 254.35 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 11 | 254.91 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 2 |
| 21 | 255.44 | wind | 1 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 41 | 256.35 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 44 | 256.51 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 46 | 256.63 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 49 | 256.71 | humidity | 80 | 1440 | < th | dose dependent | sin | 12 | NA |
| 50 | 256.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 60 | 257.14 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 66 | 257.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 78 | 257.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 140 | 258.83 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 150 | 258.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 162 | 259.06 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 197 | 259.35 | humidity | 80 | 1440 | > th | dose independent | sin | 12 | NA |
| 204 | 259.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 223 | 259.50 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 237 | 259.55 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 238 | 259.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 247 | 259.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 252 | 259.68 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 7 |
| 261 | 259.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 293 | 259.99 | humidity | 80 | 1440 | < th | dose independent | sin | 12 | NA |
| 329 | 260.21 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 3 |
| 390 | 260.46 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 402 | 260.51 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 453 | 260.71 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 1 |
| 466 | 260.72 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 1 |
| 470 | 260.73 | wind | 1 | 720 | < th | dose independent | rect. | 4 | 1 |
| 482 | 260.77 | humidity | 50 | 1440 | > th | dose dependent | sin | 14 | NA |
| 507 | 260.92 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 520 | 261.01 | wind | 1 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 524 | 261.05 | atmosphere | 995 | 90 | > th | dose independent | rect. | 5 | 23 |
| 534 | 261.08 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 4 | 1 |
| 537 | 261.10 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 563 | 261.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 637 | 261.38 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 657 | 261.40 | humidity | 80 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 683 | 261.47 | wind | 1 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 707 | 261.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 735 | 261.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 741 | 261.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 809 | 261.78 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 856 | 261.89 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 4 | 2 |
| 920 | 262.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 930 | 262.05 | atmosphere | 995 | 90 | > th | dose independent | rect. | 6 | 21 |
| 935 | 262.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 941 | 262.07 | humidity | 80 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 957 | 262.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 970 | 262.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 995 | 262.19 | atmosphere | 995 | 10 | > th | dose independent | rect. | 6 | 22 |