FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0195100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0262) R2 : 0.000879
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.035 (0.0552) R2dN8 : 0.00114 R2N8 : 0.000879
σ : 0.494
deviance : 111.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.58 0.485 3.38 0.0849 1.23 -1.66 0.666 -0.634 0.0877 17.7 0.44 725 -- --
106.64 0.481 3.38 0.113 1.19 -1.63 0.187 -- 0.0938 17.7 0.37 728 -- --
106.69 0.481 3.38 0.107 1.19 -1.62 -- 0.145 0.0919 17.8 0.44 732 -- --
106.69 0.481 3.37 0.0955 1.13 -1.55 -- -- 0.0923 17.7 0.4398 725 -- --
107.79 0.484 3.36 0.0964 -- -0.746 -- -0.468 0.0828 -- 0.3674 1449 -- --
111.2 0.494 3.36 -0.0342 0.104 -- 0.00795 -- 0.0291 5.84 -- -- -- --
111.2 0.494 3.36 -0.0342 0.104 -- -- -- 0.0291 5.83 -- -- -- --
107.99 0.484 3.36 0.0951 -- -0.577 -- -- 0.0909 -- 0.3899 1466 -- --
106.9 0.482 3.38 -- 1.06 -1.44 -- -- 0.0781 17.6 0.4381 713 -- --
111.76 0.494 3.36 -0.031 -- -- -- -- 0.0315 -- -- -- -- --
111.23 0.493 3.36 -- 0.104 -- -- -- 0.0329 5.85 -- -- -- --
108.23 0.485 3.36 -- -- -0.539 -- -- 0.087 -- 0.3895 1466 -- --
111.79 0.494 3.36 -- -- -- -- -- 0.035 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.23 humidity 90.0 90 < th dose independent rect. 2 4
2 102.26 humidity 90.0 90 < th dose independent rect. 2 2
3 102.42 humidity 90.0 90 < th dose dependent rect. 2 2
18 102.82 humidity 90.0 10 < th dose independent rect. 3 1
24 103.02 humidity 90.0 10 > th dose dependent rect. 20 1
27 103.11 atmosphere 1005.0 30 > th dose dependent rect. 2 2
30 103.28 wind 1.0 10 < th dose dependent rect. 12 3
36 103.61 atmosphere 1005.0 10 < th dose independent rect. 20 1
45 103.74 wind 1.0 10 < th dose independent rect. 12 3
48 103.78 humidity 90.0 10 > th dose dependent rect. 11 10
68 104.08 atmosphere 1005.0 10 < th dose independent rect. 18 3
78 104.25 radiation 1.0 43200 < th dose dependent rect. 3 1
118 104.96 wind 1.0 10 < th dose independent rect. 9 9
126 105.01 wind 1.0 10 < th dose independent rect. 9 5
153 105.26 humidity 70.0 10 > th dose dependent rect. 18 2
161 105.51 radiation 1.0 720 < th dose dependent rect. 22 22
164 105.55 atmosphere 1000.0 90 < th dose dependent rect. 10 3
165 105.56 humidity 90.0 10 > th dose independent rect. 19 1
169 105.56 wind 1.0 43200 < th dose dependent rect. 1 1
171 105.57 temperature 30.0 270 > th dose dependent rect. 17 18
174 105.60 wind 1.0 43200 < th dose independent rect. 24 2
177 105.64 humidity 80.0 43200 < th dose independent rect. 4 1
179 105.66 humidity 80.0 43200 > th dose independent rect. 3 1
187 105.73 wind 5.0 14400 > th dose independent rect. 11 1
188 105.73 wind 5.0 14400 < th dose independent rect. 11 1
205 105.76 wind 1.0 10 < th dose dependent rect. 8 10
220 105.78 wind 3.0 43200 < th dose dependent rect. 9 1
223 105.79 atmosphere 1000.0 90 < th dose dependent rect. 10 1
226 105.80 wind 1.0 43200 > th dose dependent rect. 19 1
227 105.80 atmosphere 1000.0 10 < th dose dependent rect. 10 2
248 105.85 wind 9.0 43200 < th dose dependent rect. 19 1
251 105.85 radiation 1.0 720 < th dose dependent rect. 6 14
253 105.86 wind 5.0 14400 < th dose independent rect. 9 4
275 105.91 wind 1.0 43200 > th dose independent rect. 24 2
282 105.93 radiation 1.0 720 < th dose dependent rect. 6 21
289 105.95 temperature 25.0 90 > th dose dependent rect. 1 5
299 105.98 wind 5.0 14400 > th dose independent rect. 9 4
304 106.00 wind 3.0 43200 > th dose independent rect. 9 1
314 106.01 wind 5.0 43200 > th dose independent rect. 19 1
318 106.02 atmosphere 1000.0 90 < th dose independent rect. 10 3
321 106.04 wind 1.0 30 < th dose independent rect. 2 1
322 106.04 wind 5.0 43200 < th dose independent rect. 19 1
325 106.04 radiation 1.0 720 < th dose independent rect. 8 5
328 106.04 humidity 80.0 43200 < th dose dependent rect. 2 1
329 106.04 radiation 1.0 720 < th dose dependent rect. 8 5
331 106.05 wind 1.0 10 < th dose independent sin 21 NA
337 106.05 temperature 10.0 30 > th dose dependent rect. 3 23
344 106.07 wind 3.0 30 < th dose dependent rect. 2 1
348 106.08 temperature 20.0 30 > th dose dependent rect. 2 1
349 106.08 humidity 80.0 43200 < th dose dependent rect. 5 1
353 106.09 temperature 25.0 90 > th dose independent rect. 1 6
361 106.10 humidity 80.0 43200 > th dose independent rect. 22 10
384 106.14 humidity 80.0 43200 < th dose dependent rect. 2 4
388 106.16 atmosphere 1005.0 90 > th dose independent rect. 2 1
406 106.20 wind 1.0 10 > th dose independent sin 21 NA
408 106.20 temperature 20.0 30 > th dose independent rect. 2 1
417 106.20 wind 3.0 14400 > th dose dependent rect. 9 4
419 106.21 wind 9.0 1440 < th dose independent rect. 3 1
420 106.21 temperature 10.0 1440 > th dose independent rect. 3 1
423 106.21 temperature 30.0 1440 < th dose independent rect. 3 1
427 106.21 humidity 50.0 1440 > th dose independent rect. 3 1
436 106.21 atmosphere 995.0 1440 > th dose independent rect. 3 1
437 106.21 radiation 1.0 1440 < th dose independent rect. 3 1
463 106.21 temperature 10.0 1440 > th dose independent rect. 4 23
481 106.23 wind 3.0 14400 > th dose dependent rect. 11 1
484 106.23 radiation 1.0 1440 < th dose dependent rect. 18 3
486 106.24 wind 7.0 14400 < th dose dependent rect. 11 1
503 106.27 radiation 1.0 720 < th dose independent rect. 22 22
507 106.27 radiation 1.0 1440 < th dose dependent rect. 18 11
516 106.29 radiation 1.0 1440 < th dose dependent rect. 18 7
517 106.29 temperature 10.0 30 > th dose dependent rect. 7 19
529 106.31 radiation 1.0 720 < th dose dependent rect. 7 8
530 106.31 temperature 30.0 720 > th dose dependent rect. 18 16
533 106.32 temperature 25.0 30 < th dose independent rect. 2 1
536 106.32 radiation 1.0 720 > th dose independent rect. 7 8
542 106.33 humidity 80.0 30 > th dose independent rect. 2 1
547 106.34 atmosphere 1000.0 10 < th dose independent rect. 11 1
574 106.36 wind 5.0 14400 > th dose independent rect. 8 8
576 106.36 temperature 30.0 720 > th dose dependent rect. 9 1
581 106.36 wind 7.0 14400 < th dose dependent rect. 9 4
596 106.37 temperature 10.0 30 > th dose independent rect. 2 1
599 106.37 humidity 50.0 30 > th dose independent rect. 2 1
603 106.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
605 106.37 radiation 1.0 30 < th dose independent rect. 2 1
610 106.37 precipitation 0.1 30 < th dose independent rect. 2 1
612 106.37 radiation 1.0 720 < th dose independent rect. 6 14
613 106.37 temperature 10.0 30 > th dose independent rect. 3 23
614 106.37 humidity 50.0 30 > th dose dependent rect. 2 1
617 106.37 radiation 1.0 30 < th dose dependent rect. 2 1
622 106.37 precipitation 0.1 30 < th dose dependent rect. 2 1
631 106.39 temperature 30.0 1440 < th dose independent rect. 3 6
641 106.40 wind 3.0 43200 > th dose independent rect. 16 18
650 106.42 wind 3.0 43200 > th dose independent rect. 2 15
660 106.43 radiation 1.0 720 < th dose independent rect. 7 8
663 106.43 radiation 1.0 720 > th dose independent rect. 17 22
664 106.43 radiation 1.0 720 < th dose dependent sin 0 NA
674 106.44 wind 3.0 43200 < th dose independent rect. 16 18
677 106.44 wind 3.0 43200 > th dose independent rect. 20 21
679 106.44 radiation 1.0 1440 < th dose dependent rect. 18 20
680 106.44 wind 7.0 43200 < th dose dependent rect. 19 22
690 106.46 humidity 90.0 10 > th dose independent rect. 11 10
693 106.46 wind 3.0 43200 > th dose independent rect. 18 16
707 106.47 radiation 1.0 43200 < th dose dependent rect. 21 3
713 106.47 wind 1.0 43200 > th dose dependent rect. 19 22
716 106.48 wind 3.0 43200 < th dose independent rect. 18 16
725 106.48 wind 7.0 43200 < th dose dependent rect. 5 12
728 106.48 radiation 1.0 720 < th dose dependent rect. 1 23
742 106.49 wind 1.0 43200 > th dose dependent rect. 5 12
744 106.49 wind 7.0 43200 < th dose dependent rect. 24 17
747 106.49 wind 9.0 43200 < th dose dependent rect. 24 21
749 106.49 wind 7.0 43200 < th dose dependent rect. 14 22
750 106.50 wind 3.0 43200 > th dose independent sin 3 NA
757 106.50 temperature 25.0 14400 > th dose dependent rect. 4 1
764 106.50 wind 1.0 43200 > th dose dependent rect. 3 18
765 106.50 wind 9.0 43200 < th dose dependent rect. 3 18
769 106.50 wind 1.0 43200 > th dose dependent rect. 24 21
795 106.51 wind 1.0 43200 > th dose dependent rect. 24 17
806 106.52 wind 3.0 43200 < th dose independent rect. 2 15
808 106.52 temperature 20.0 30 > th dose independent rect. 20 16
831 106.52 wind 1.0 43200 > th dose dependent rect. 14 22
840 106.53 wind 3.0 43200 < th dose independent rect. 20 21
841 106.53 radiation 1.0 720 > th dose independent rect. 10 22
842 106.53 wind 7.0 43200 < th dose dependent sin 1 NA
868 106.54 temperature 25.0 1440 > th dose independent rect. 1 1
909 106.54 wind 9.0 43200 < th dose dependent rect. 5 23
911 106.54 wind 9.0 43200 < th dose dependent rect. 8 23
928 106.55 wind 1.0 43200 > th dose dependent sin 1 NA
929 106.55 wind 9.0 43200 < th dose dependent no NA NA
961 106.55 wind 9.0 43200 < th dose dependent rect. 11 23
972 106.56 temperature 30.0 270 > th dose independent rect. 17 18