FiT-DB / Search/ Help/ Sample detail

Os01g0193500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0151) R2 : 0.000347
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0126 (0.0318) R2dN8 : 0.000449 R2N8 : 0.000347
σ : 0.284
deviance : 37.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.61 0.251 10.9 0.00168 0.296 0.34 0.0526 0.541 0.0136 3.44 69 1181 -- --
28.96 0.251 10.9 0.0816 0.274 0.398 -0.142 -- 0.0334 2.56 69 1060 -- --
28.46 0.248 10.9 0.0116 0.287 0.375 -- 0.545 0.0152 2.71 69.18 1067 -- --
29.03 0.251 10.9 0.0803 0.28 0.396 -- -- 0.0359 2.64 69 1060 -- --
30.46 0.257 10.9 0.119 -- 0.537 -- 0.184 0.072 -- 70.02 1774 -- --
34.05 0.274 10.9 -0.00646 0.236 -- 0.087 -- 0.00715 4.72 -- -- -- --
34.07 0.273 10.9 -0.00705 0.236 -- -- -- 0.00667 4.56 -- -- -- --
30.33 0.257 10.9 0.0987 -- 0.521 -- -- 0.0749 -- 71 1778 -- --
29.15 0.251 10.9 -- 0.29 0.395 -- -- 0.0228 2.71 70 1067 -- --
37.03 0.284 10.9 0.00206 -- -- -- -- 0.0129 -- -- -- -- --
34.07 0.273 10.9 -- 0.236 -- -- -- 0.00746 4.57 -- -- -- --
30.48 0.257 10.9 -- -- 0.495 -- -- 0.0689 -- 70 1775 -- --
37.03 0.284 10.9 -- -- -- -- -- 0.0126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.00 precipitation 0.1 14400 > th dose independent rect. 19 1
2 27.01 precipitation 0.1 14400 < th dose independent rect. 19 1
3 27.01 precipitation 0.1 14400 < th dose dependent rect. 19 1
4 27.18 precipitation 0.1 14400 > th dose dependent rect. 19 1
5 27.18 precipitation 0.1 1440 > th dose dependent rect. 5 3
6 27.23 precipitation 0.1 1440 > th dose dependent rect. 5 5
7 27.26 precipitation 0.1 1440 < th dose independent rect. 5 3
8 27.26 precipitation 0.1 1440 < th dose dependent rect. 5 3
9 27.28 precipitation 0.1 1440 > th dose independent rect. 5 3
16 27.37 precipitation 0.1 1440 > th dose independent rect. 5 5
22 27.46 precipitation 0.1 1440 < th dose independent rect. 5 5
23 27.46 precipitation 0.1 1440 < th dose dependent rect. 5 5
27 27.65 precipitation 0.1 1440 < th dose independent rect. 5 7
28 27.65 precipitation 0.1 1440 < th dose dependent rect. 5 7
33 27.71 wind 9.0 14400 > th dose independent rect. 7 4
34 27.72 humidity 80.0 1440 > th dose dependent rect. 7 5
36 27.82 wind 9.0 14400 > th dose independent rect. 10 1
38 27.83 wind 9.0 14400 < th dose independent rect. 10 1
50 28.01 wind 9.0 14400 < th dose independent rect. 7 4
58 28.10 wind 3.0 43200 < th dose dependent rect. 23 8
70 28.23 precipitation 0.1 14400 > th dose independent rect. 17 1
77 28.26 wind 3.0 43200 < th dose independent rect. 5 2
78 28.28 wind 3.0 43200 > th dose independent rect. 5 2
82 28.29 humidity 80.0 1440 > th dose independent rect. 6 6
89 28.31 humidity 80.0 1440 < th dose independent rect. 6 6
95 28.32 humidity 70.0 1440 > th dose independent rect. 11 1
104 28.34 wind 5.0 43200 < th dose dependent rect. 5 2
117 28.37 wind 3.0 43200 < th dose independent rect. 23 8
134 28.42 wind 1.0 43200 > th dose dependent rect. 5 2
141 28.44 wind 3.0 43200 < th dose independent rect. 1 6
143 28.44 precipitation 0.1 720 > th dose dependent rect. 24 20
160 28.48 wind 5.0 43200 < th dose dependent rect. 1 2
177 28.50 wind 3.0 43200 > th dose independent rect. 23 8
180 28.50 precipitation 0.1 720 > th dose independent rect. 24 17
184 28.51 wind 3.0 43200 > th dose independent rect. 1 6
203 28.54 precipitation 0.1 14400 < th dose independent rect. 17 1
208 28.54 precipitation 0.1 14400 < th dose dependent rect. 17 1
225 28.56 precipitation 0.1 720 > th dose independent rect. 24 20
242 28.59 wind 1.0 43200 > th dose dependent rect. 23 8
262 28.62 wind 3.0 43200 < th dose dependent rect. 3 5
283 28.65 precipitation 0.1 14400 > th dose dependent rect. 17 1
291 28.67 precipitation 0.1 14400 < th dose independent rect. 15 1
296 28.67 precipitation 0.1 14400 < th dose dependent rect. 15 1
302 28.68 wind 3.0 43200 < th dose independent rect. 23 14
311 28.69 wind 3.0 43200 < th dose independent rect. 1 3
323 28.70 wind 3.0 14400 < th dose independent rect. 3 1
325 28.70 humidity 70.0 1440 < th dose independent rect. 10 2
330 28.70 wind 3.0 43200 < th dose independent rect. 1 12
337 28.71 precipitation 0.1 14400 > th dose independent rect. 15 1
341 28.71 precipitation 0.1 14400 > th dose dependent rect. 15 1
370 28.74 precipitation 0.1 720 > th dose dependent rect. 24 17
379 28.76 wind 3.0 43200 > th dose independent rect. 1 3
400 28.78 precipitation 0.1 14400 > th dose dependent rect. 4 13
401 28.79 wind 1.0 43200 > th dose independent rect. 1 1
405 28.79 precipitation 0.1 1440 < th dose independent rect. 24 12
406 28.79 precipitation 0.1 1440 > th dose independent rect. 24 14
410 28.79 precipitation 0.1 1440 < th dose dependent rect. 24 12
414 28.80 precipitation 0.1 14400 > th dose independent rect. 9 8
415 28.80 precipitation 0.1 1440 < th dose independent rect. 24 10
422 28.80 precipitation 0.1 1440 < th dose dependent rect. 24 10
423 28.80 wind 3.0 43200 < th dose dependent rect. 1 11
427 28.81 humidity 70.0 1440 > th dose independent rect. 19 19
444 28.82 wind 3.0 43200 > th dose independent rect. 1 12
449 28.82 precipitation 0.1 14400 > th dose dependent rect. 9 8
461 28.83 precipitation 0.1 1440 > th dose independent rect. 24 11
463 28.83 wind 3.0 43200 > th dose independent rect. 23 14
465 28.83 precipitation 0.1 4320 > th dose independent rect. 24 17
476 28.84 precipitation 0.1 720 < th dose independent sin 1 NA
477 28.84 precipitation 0.1 14400 < th dose independent rect. 13 4
482 28.84 precipitation 0.1 720 < th dose dependent sin 1 NA
484 28.84 wind 7.0 14400 > th dose dependent rect. 10 1
487 28.84 precipitation 0.1 14400 < th dose dependent rect. 13 4
492 28.85 wind 3.0 14400 > th dose independent rect. 3 1
502 28.85 precipitation 0.1 14400 > th dose independent rect. 4 13
511 28.86 precipitation 0.1 14400 > th dose independent rect. 13 4
513 28.86 precipitation 0.1 14400 < th dose independent rect. 9 8
520 28.86 precipitation 0.1 4320 < th dose independent rect. 24 17
525 28.86 precipitation 0.1 14400 < th dose dependent rect. 9 8
529 28.86 precipitation 0.1 4320 < th dose dependent rect. 24 17
541 28.87 precipitation 0.1 14400 > th dose dependent rect. 7 10
546 28.88 wind 3.0 43200 < th dose independent sin 7 NA
552 28.88 precipitation 0.1 14400 < th dose independent rect. 4 13
567 28.88 precipitation 0.1 14400 < th dose dependent rect. 4 13
599 28.90 humidity 70.0 1440 > th dose independent rect. 22 16
615 28.91 humidity 70.0 1440 < th dose independent rect. 19 19
616 28.91 wind 9.0 14400 > th dose dependent rect. 6 5
634 28.92 precipitation 0.1 14400 > th dose dependent rect. 13 4
642 28.93 humidity 70.0 1440 > th dose independent sin 3 NA
719 28.96 wind 3.0 43200 < th dose independent rect. 4 9
745 28.97 precipitation 0.1 720 > th dose independent sin 2 NA
786 28.99 wind 3.0 43200 > th dose independent sin 7 NA
828 29.01 humidity 80.0 1440 < th dose independent sin 5 NA
889 29.03 humidity 70.0 1440 < th dose independent rect. 19 21
890 29.03 wind 3.0 43200 < th dose dependent sin 7 NA
896 29.03 precipitation 0.1 4320 > th dose dependent rect. 23 18
901 29.04 precipitation 0.1 4320 < th dose independent rect. 2 6
920 29.04 humidity 60.0 1440 > th dose dependent sin 4 NA
925 29.04 precipitation 0.1 4320 < th dose dependent rect. 2 6
952 29.05 humidity 80.0 43200 < th dose dependent rect. 5 1
975 29.06 wind 1.0 14400 > th dose dependent rect. 2 2
980 29.06 precipitation 0.1 1440 > th dose dependent rect. 24 11
984 29.06 precipitation 0.1 1440 > th dose dependent rect. 24 14