Os01g0191900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Blind.
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Os01g0191900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Blind.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.29 | 0.475 | 9.12 | 0.461 | 1.08 | -1.5 | 1.5 | 1.18 | 0.471 | 20.3 | 25.35 | 106 | -- | -- |
| 104.58 | 0.476 | 9.1 | 0.623 | 1.04 | -1.56 | 1.48 | -- | 0.505 | 20.2 | 25.2 | 131 | -- | -- |
| 107.99 | 0.488 | 9.12 | 0.384 | 1.17 | -1.34 | -- | 1.76 | 0.487 | 19.9 | 25.13 | 104 | -- | -- |
| 111.37 | 0.492 | 9.08 | 0.592 | 1.03 | -1.52 | -- | -- | 0.534 | 19.6 | 25 | 252 | -- | -- |
| 136.07 | 0.543 | 9.08 | 0.342 | -- | -2.31 | -- | 0.691 | 0.453 | -- | 42.78 | 491 | -- | -- |
| 142.59 | 0.56 | 9.02 | 1.01 | 1.14 | -- | 1.29 | -- | 0.829 | 19.4 | -- | -- | -- | -- |
| 146.32 | 0.566 | 9.02 | 0.987 | 1.16 | -- | -- | -- | 0.834 | 19 | -- | -- | -- | -- |
| 136.38 | 0.544 | 9.07 | 0.455 | -- | -2.29 | -- | -- | 0.483 | -- | 53.9 | 502 | -- | -- |
| 120.37 | 0.511 | 9.12 | -- | 1.12 | -1.67 | -- | -- | 0.432 | 19.7 | 24.94 | 236 | -- | -- |
| 216.55 | 0.688 | 9 | 0.963 | -- | -- | -- | -- | 0.813 | -- | -- | -- | -- | -- |
| 171.97 | 0.613 | 9.05 | -- | 1.14 | -- | -- | -- | 0.724 | 19.1 | -- | -- | -- | -- |
| 141.4 | 0.554 | 9.09 | -- | -- | -2.45 | -- | -- | 0.414 | -- | 69.6 | 507 | -- | -- |
| 241.03 | 0.725 | 9.02 | -- | -- | -- | -- | -- | 0.706 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 7 | 93.51 | temperature | 30 | 90 | < th | dose dependent | sin | 13 | NA |
| 16 | 94.29 | temperature | 10 | 90 | > th | dose dependent | sin | 13 | NA |
| 19 | 94.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 59 | 96.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 69 | 96.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 16 |
| 83 | 97.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 98 | 97.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 128 | 98.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 179 | 99.02 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 203 | 99.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 228 | 99.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 242 | 99.94 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 18 |
| 251 | 100.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 267 | 100.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 316 | 100.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 335 | 100.70 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 400 | 101.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 455 | 101.44 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 457 | 101.45 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 470 | 101.51 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 484 | 101.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 491 | 101.59 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 518 | 101.76 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 531 | 101.81 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 594 | 102.06 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 641 | 102.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 657 | 102.29 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 679 | 102.40 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 730 | 102.57 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 735 | 102.58 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 780 | 102.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 818 | 102.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 838 | 102.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 864 | 103.03 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 904 | 103.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 910 | 103.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 934 | 103.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 940 | 103.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 958 | 103.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 966 | 103.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 992 | 103.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 995 | 103.39 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |