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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0191800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase 12 (EC 2.7.1.37) (Aurora-B) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.61 (0.0371) R2 : 0.274
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.686 (0.0946) R2dC : 0.0842 R2C : 0.075
β3 : 6.27 (0.699) R2dE : 0.127 R2E : 0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.473 (0.0779) R2dN8 : 0.0767 R2N8 : 0.0558
σ : 0.695
deviance : 222.66
__
_____
C
peak time of C : 7.98
E
wheather : temperature
threshold : 18.79
memory length : 192
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.63
open length of G : 0.183

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.41 0.701 3.6 0.0741 0.683 3.15 -0.0651 -6.84 0.486 8.02 18.91 77 2.33 0.71
222.72 0.695 3.61 0.0947 0.691 6.27 -0.0722 -- 0.483 8 18.07 113 2.79 0.316
222.42 0.695 3.6 0.0739 0.683 3.32 -- -6.48 0.486 8.02 18.89 81 2.37 0.7
222.53 0.695 3.61 0.0642 0.693 6.17 -- -- 0.467 7.91 18.78 194 2.65 0.117
247.86 0.733 3.62 0.0828 -- 3.57 -- -6.3 0.496 -- 18.91 84 2.4 0.66
261.1 0.758 3.61 -0.0184 0.721 -- -0.35 -- 0.451 7.65 -- -- -- --
261.43 0.757 3.61 -0.0265 0.72 -- -- -- 0.452 7.72 -- -- -- --
247.85 0.733 3.62 0.104 -- 6.44 -- -- 0.497 -- 18.84 179 2.66 0.0791
222.66 0.695 3.61 -- 0.686 6.27 -- -- 0.473 7.98 18.79 192 2.63 0.183
289.39 0.795 3.63 -0.0173 -- -- -- -- 0.462 -- -- -- -- --
261.45 0.756 3.61 -- 0.72 -- -- -- 0.455 7.72 -- -- -- --
248.13 0.734 3.62 -- -- 6.39 -- -- 0.485 -- 18.84 181 2.66 0.0698
289.4 0.794 3.63 -- -- -- -- -- 0.464 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.16 temperature 20 90 < th dose dependent rect. 2 1
3 236.89 temperature 25 4320 > th dose dependent rect. 7 3
9 237.51 wind 1 43200 < th dose dependent rect. 18 11
11 237.72 wind 5 14400 > th dose dependent rect. 11 2
12 237.74 wind 7 14400 > th dose independent rect. 12 1
13 237.83 humidity 90 43200 > th dose dependent rect. 23 4
15 237.89 humidity 90 43200 > th dose independent rect. 18 11
16 237.93 humidity 90 43200 > th dose dependent rect. 2 1
18 237.97 wind 7 14400 > th dose independent rect. 11 3
24 238.03 wind 7 14400 < th dose independent rect. 12 1
26 238.06 wind 7 14400 < th dose independent rect. 11 3
46 238.22 humidity 90 43200 < th dose independent rect. 18 11
60 238.34 humidity 90 43200 > th dose independent rect. 1 7
71 238.43 humidity 90 43200 > th dose independent rect. 23 9
83 238.51 humidity 90 90 > th dose independent rect. 2 1
86 238.52 wind 9 14400 < th dose independent rect. 7 8
116 238.69 radiation 1 43200 > th dose dependent rect. 4 2
130 238.72 humidity 90 43200 < th dose independent sin 11 NA
138 238.74 radiation 40 43200 < th dose dependent rect. 3 3
148 238.78 radiation 40 43200 < th dose dependent rect. 19 11
150 238.80 radiation 40 43200 < th dose dependent rect. 24 6
164 238.84 humidity 90 43200 > th dose independent sin 11 NA
188 238.88 humidity 90 43200 > th dose dependent rect. 14 15
201 238.93 radiation 10 43200 < th dose independent rect. 3 4
203 238.93 radiation 10 43200 < th dose independent rect. 24 7
205 238.93 radiation 10 43200 < th dose independent rect. 20 11
227 238.97 radiation 20 43200 < th dose independent rect. 16 15
248 239.05 humidity 90 43200 < th dose independent rect. 23 11
300 239.23 temperature 25 43200 > th dose independent rect. 7 1
301 239.23 temperature 25 43200 < th dose independent rect. 7 1
317 239.28 temperature 20 90 < th dose independent rect. 3 1
340 239.35 humidity 90 43200 > th dose dependent sin 12 NA
348 239.40 temperature 30 14400 > th dose independent rect. 12 1
349 239.40 temperature 30 14400 < th dose independent rect. 12 1
366 239.47 temperature 25 4320 > th dose independent rect. 7 3
391 239.56 radiation 30 43200 < th dose independent rect. 3 5
392 239.56 radiation 30 43200 < th dose independent rect. 24 8
393 239.56 radiation 30 43200 < th dose independent rect. 20 12
406 239.59 radiation 30 43200 < th dose independent rect. 6 2
442 239.69 temperature 25 14400 < th dose independent rect. 5 4
446 239.71 temperature 25 14400 > th dose independent rect. 5 4
460 239.74 wind 1 43200 < th dose independent rect. 19 9
466 239.76 radiation 40 43200 < th dose independent rect. 16 17
467 239.76 radiation 40 4320 < th dose dependent rect. 3 2
487 239.81 wind 9 14400 > th dose independent sin 3 NA
516 239.86 radiation 10 43200 < th dose independent rect. 17 1
521 239.86 humidity 80 43200 > th dose dependent rect. 23 17
532 239.90 temperature 30 43200 < th dose independent rect. 15 2
542 239.91 humidity 80 43200 > th dose dependent rect. 24 15
559 239.98 temperature 30 43200 > th dose independent rect. 15 1
578 240.03 wind 9 14400 < th dose independent sin 3 NA
588 240.06 humidity 90 43200 > th dose independent rect. 23 1
605 240.10 radiation 20 43200 < th dose independent rect. 16 5
608 240.10 radiation 20 43200 < th dose independent rect. 16 9
617 240.11 temperature 30 14400 < th dose independent rect. 12 5
639 240.15 temperature 30 14400 > th dose independent rect. 12 5
643 240.15 wind 7 43200 > th dose dependent rect. 14 3
692 240.24 temperature 30 43200 < th dose independent rect. 14 13
709 240.25 temperature 30 43200 < th dose independent rect. 14 16
716 240.26 temperature 30 14400 < th dose independent rect. 12 14
731 240.27 temperature 30 14400 < th dose independent rect. 12 18
834 240.36 wind 7 43200 > th dose dependent rect. 11 6
850 240.39 radiation 1 43200 > th dose independent rect. 10 1
851 240.39 radiation 1 43200 < th dose independent rect. 10 1
856 240.39 radiation 1 43200 < th dose dependent rect. 10 1
926 240.44 humidity 60 43200 > th dose independent rect. 18 2
949 240.47 temperature 25 43200 > th dose dependent rect. 18 1
983 240.51 temperature 25 14400 < th dose independent rect. 23 10
988 240.51 radiation 20 43200 > th dose dependent rect. 16 16