Os01g0191100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acidic ribosomal protein P2a-4 (Fragment).
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Os01g0191100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acidic ribosomal protein P2a-4 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.47 | 0.522 | 12.8 | -0.15 | 1.22 | 0.762 | 1.02 | -1.8 | -0.321 | 16.5 | 20.54 | 2806 | -- | -- |
| 127.31 | 0.526 | 12.8 | 0.268 | 1.14 | 1.02 | 1.09 | -- | -0.218 | 16.3 | 20.4 | 1288 | -- | -- |
| 126.08 | 0.523 | 12.8 | -0.161 | 1.22 | 0.776 | -- | -1.83 | -0.319 | 16.4 | 20.55 | 2720 | -- | -- |
| 130 | 0.531 | 12.8 | 0.318 | 1.17 | 1.09 | -- | -- | -0.217 | 16.4 | 20.44 | 1304 | -- | -- |
| 204.49 | 0.666 | 12.8 | -0.16 | -- | 0.731 | -- | -1.86 | -0.324 | -- | 19.8 | 3266 | -- | -- |
| 151.64 | 0.577 | 12.7 | 0.754 | 1.17 | -- | 1.28 | -- | 0.0354 | 16.6 | -- | -- | -- | -- |
| 156 | 0.585 | 12.7 | 0.763 | 1.18 | -- | -- | -- | 0.0422 | 16.5 | -- | -- | -- | -- |
| 206.08 | 0.669 | 12.7 | 0.264 | -- | 1.06 | -- | -- | -0.234 | -- | 20.56 | 1694 | -- | -- |
| 130.74 | 0.533 | 12.8 | -- | 1.23 | 1.35 | -- | -- | -0.246 | 16.4 | 19.1 | 2740 | -- | -- |
| 230.04 | 0.709 | 12.7 | 0.717 | -- | -- | -- | -- | 0.0111 | -- | -- | -- | -- | -- |
| 171.33 | 0.612 | 12.7 | -- | 1.16 | -- | -- | -- | -0.0428 | 16.5 | -- | -- | -- | -- |
| 207.46 | 0.671 | 12.7 | -- | -- | 1.18 | -- | -- | -0.274 | -- | 20.5 | 1697 | -- | -- |
| 243.59 | 0.728 | 12.7 | -- | -- | -- | -- | -- | -0.0684 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 118.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 13 | 120.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 22 | 120.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 45 | 122.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 54 | 122.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 66 | 122.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 68 | 122.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 84 | 123.01 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 131 | 123.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 132 | 123.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 135 | 123.49 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 146 | 123.55 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 158 | 123.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 171 | 123.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 179 | 123.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 189 | 123.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 234 | 124.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 249 | 124.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 250 | 124.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 293 | 124.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 349 | 124.51 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 380 | 124.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 401 | 124.71 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 592 | 125.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 606 | 125.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 687 | 125.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 721 | 125.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 724 | 125.54 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 749 | 125.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 751 | 125.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 752 | 125.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 761 | 125.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 763 | 125.61 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 765 | 125.61 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 784 | 125.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 801 | 125.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 804 | 125.68 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 811 | 125.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 817 | 125.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 839 | 125.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 853 | 125.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 903 | 125.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 905 | 125.87 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |