Os01g0188400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NADP-dependent malic enzyme, chloroplast precursor (EC 1.1.1.40) (NADP-ME).
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Os01g0188400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NADP-dependent malic enzyme, chloroplast precursor (EC 1.1.1.40) (NADP-ME).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.83 | 0.381 | 11.5 | -1.09 | 3.23 | 0.547 | 0.875 | -2.23 | -0.0108 | 7.87 | 25.66 | 1298 | -- | -- |
| 66.49 | 0.38 | 11.4 | -0.846 | 3.26 | 0.64 | 0.846 | -- | 0.0617 | 7.81 | 22.84 | 19580 | -- | -- |
| 67.78 | 0.383 | 11.5 | -1.09 | 3.24 | 0.564 | -- | -2.41 | -0.00819 | 7.87 | 25.7 | 1265 | -- | -- |
| 68.98 | 0.387 | 11.4 | -0.827 | 3.25 | 0.633 | -- | -- | 0.0634 | 7.8 | 22.89 | 19557 | -- | -- |
| 630.63 | 1.17 | 11.6 | -1.01 | -- | 0.601 | -- | -1.95 | 0.0256 | -- | 24.88 | 1378 | -- | -- |
| 73.95 | 0.403 | 11.4 | -0.334 | 3.23 | -- | 0.931 | -- | 0.329 | 7.79 | -- | -- | -- | -- |
| 76.44 | 0.409 | 11.4 | -0.31 | 3.24 | -- | -- | -- | 0.328 | 7.78 | -- | -- | -- | -- |
| 626.72 | 1.17 | 11.5 | -0.466 | -- | 0.473 | -- | -- | 0.205 | -- | 22.89 | 19557 | -- | -- |
| 76.05 | 0.406 | 11.4 | -- | 3.26 | 0.286 | -- | -- | 0.29 | 7.79 | 27.1 | 7034 | -- | -- |
| 642.56 | 1.18 | 11.5 | -0.271 | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
| 78.98 | 0.416 | 11.4 | -- | 3.23 | -- | -- | -- | 0.362 | 7.78 | -- | -- | -- | -- |
| 632.1 | 1.17 | 11.5 | -- | -- | 0.406 | -- | -- | 0.278 | -- | 22.89 | 19557 | -- | -- |
| 644.5 | 1.18 | 11.4 | -- | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.21 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 4 | 59.40 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 6 | 59.55 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 12 | 59.87 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 16 | 60.01 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 46 | 61.70 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 3 |
| 54 | 62.00 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 2 |
| 56 | 62.03 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 95 | 62.84 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 115 | 63.30 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 170 | 64.20 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 177 | 64.25 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 182 | 64.36 | humidity | 90.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 189 | 64.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 207 | 64.67 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 210 | 64.71 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 224 | 64.85 | wind | 1.0 | 30 | > th | dose independent | rect. | 1 | 18 |
| 241 | 64.98 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 246 | 65.00 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 257 | 65.07 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 300 | 65.22 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 345 | 65.36 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 352 | 65.38 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 388 | 65.46 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 11 |
| 405 | 65.48 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 411 | 65.49 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 5 |
| 426 | 65.50 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 10 |
| 431 | 65.50 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 435 | 65.51 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 436 | 65.51 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 445 | 65.53 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 11 |
| 464 | 65.55 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 3 |
| 473 | 65.55 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 488 | 65.57 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 493 | 65.57 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 508 | 65.59 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 527 | 65.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 544 | 65.65 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 562 | 65.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 566 | 65.70 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 581 | 65.73 | humidity | 90.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 590 | 65.74 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 598 | 65.75 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 622 | 65.79 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 623 | 65.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 635 | 65.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 647 | 65.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 664 | 65.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 666 | 65.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 668 | 65.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 674 | 65.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 694 | 65.87 | humidity | 90.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 712 | 65.89 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 713 | 65.89 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 714 | 65.89 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 729 | 65.90 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 739 | 65.91 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 743 | 65.91 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 752 | 65.92 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 759 | 65.93 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 780 | 65.95 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 821 | 66.00 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 854 | 66.03 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 859 | 66.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 867 | 66.04 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 880 | 66.05 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 886 | 66.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 900 | 66.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 910 | 66.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 916 | 66.06 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 11 |
| 919 | 66.07 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 948 | 66.09 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 956 | 66.10 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 986 | 66.12 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 1000 | 66.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 7 |