Os01g0187300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os01g0187300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 308.83 | 0.826 | 2.94 | 0.592 | 0.215 | -0.229 | -0.22 | 8.06 | -0.00737 | 11.6 | 30.2 | 97 | -- | -- |
| 317.24 | 0.83 | 3 | -0.0479 | 0.212 | 0.693 | -0.179 | -- | -0.0155 | 10.5 | 30.12 | 69 | -- | -- |
| 309.04 | 0.819 | 2.94 | 0.58 | 0.216 | -0.218 | -- | 7.98 | -0.00849 | 11.4 | 30.19 | 97 | -- | -- |
| 317.09 | 0.829 | 3.01 | -0.0633 | 0.19 | 0.668 | -- | -- | -0.0231 | 11.2 | 30.1 | 77 | -- | -- |
| 311.92 | 0.823 | 2.95 | 0.552 | -- | -0.161 | -- | 7.78 | -0.00393 | -- | 30.1 | 97 | -- | -- |
| 328.36 | 0.85 | 3.03 | 0.0149 | 0.294 | -- | 0.111 | -- | -0.0778 | 13.8 | -- | -- | -- | -- |
| 328.4 | 0.849 | 3.03 | 0.0183 | 0.294 | -- | -- | -- | -0.0773 | 13.7 | -- | -- | -- | -- |
| 319.21 | 0.832 | 3.02 | -0.0774 | -- | 0.686 | -- | -- | -0.0345 | -- | 30.06 | 69 | -- | -- |
| 317.21 | 0.83 | 3.01 | -- | 0.19 | 0.659 | -- | -- | -0.0223 | 11.3 | 30.12 | 77 | -- | -- |
| 333.65 | 0.854 | 3.03 | 0.00633 | -- | -- | -- | -- | -0.0839 | -- | -- | -- | -- | -- |
| 328.41 | 0.848 | 3.03 | -- | 0.294 | -- | -- | -- | -0.0793 | 13.7 | -- | -- | -- | -- |
| 319.36 | 0.832 | 3.02 | -- | -- | 0.678 | -- | -- | -0.0267 | -- | 30.05 | 69 | -- | -- |
| 333.66 | 0.853 | 3.03 | -- | -- | -- | -- | -- | -0.0846 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 298.59 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 6 |
| 3 | 299.77 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 12 |
| 21 | 301.16 | temperature | 30 | 90 | < th | dose independent | rect. | 2 | 15 |
| 26 | 302.79 | temperature | 30 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 30 | 303.16 | temperature | 30 | 90 | > th | dose independent | sin | 2 | NA |
| 32 | 303.38 | temperature | 30 | 90 | < th | dose independent | rect. | 2 | 23 |
| 69 | 304.34 | temperature | 30 | 90 | < th | dose independent | sin | 2 | NA |
| 71 | 304.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 16 |
| 75 | 304.80 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 20 |
| 82 | 305.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 24 | 13 |
| 87 | 305.93 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 3 |
| 91 | 306.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 15 |
| 115 | 306.69 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 130 | 307.09 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 133 | 307.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 12 |
| 179 | 307.84 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 187 | 307.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 7 |
| 238 | 308.52 | temperature | 30 | 90 | > th | dose independent | rect. | 13 | 23 |
| 252 | 308.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 312 | 309.06 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 23 |
| 417 | 309.58 | radiation | 30 | 10 | > th | dose independent | rect. | 15 | 1 |
| 430 | 309.58 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 14 |
| 450 | 309.78 | temperature | 30 | 90 | > th | dose independent | no | NA | NA |
| 604 | 310.18 | temperature | 30 | 10 | > th | dose dependent | sin | 7 | NA |
| 654 | 310.50 | temperature | 25 | 10 | > th | dose dependent | sin | 4 | NA |
| 656 | 310.53 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 668 | 310.64 | temperature | 30 | 90 | < th | dose independent | no | NA | NA |
| 691 | 310.72 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 23 |
| 748 | 311.37 | temperature | 30 | 90 | > th | dose independent | rect. | 14 | 1 |
| 751 | 311.42 | temperature | 30 | 90 | > th | dose independent | rect. | 13 | 3 |
| 788 | 311.93 | temperature | 30 | 90 | < th | dose independent | rect. | 7 | 23 |
| 810 | 311.99 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 16 |
| 878 | 312.40 | temperature | 30 | 90 | < th | dose independent | rect. | 15 | 23 |
| 940 | 312.70 | temperature | 30 | 10 | < th | dose independent | rect. | 23 | 23 |