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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0187200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0212) R2 : 0.00409
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.061 (0.0446) R2dN8 : 0.00528 R2N8 : 0.00409
σ : 0.399
deviance : 72.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.36 0.383 3.21 -0.00663 0.113 -0.413 0.246 1.82 -0.0686 9.81 1.021 16 -- --
69.18 0.387 3.19 0.0668 0.12 -0.288 0.321 -- -0.0497 9.93 1.1 16 -- --
66.59 0.38 3.21 0.0019 0.113 -0.409 -- 1.85 -0.0687 9.54 1.022 16 -- --
69.53 0.388 3.19 0.0772 0.126 -0.268 -- -- -0.0488 8.96 1.037 16 -- --
67.34 0.382 3.21 -0.00152 -- -0.42 -- 1.89 -0.0689 -- 1.02 16 -- --
70.99 0.395 3.19 0.105 0.163 -- 0.213 -- -0.0505 7.9 -- -- -- --
71.09 0.395 3.19 0.11 0.167 -- -- -- -0.0513 7.33 -- -- -- --
70.43 0.391 3.19 0.0745 -- -0.288 -- -- -0.0475 -- 1.079 16 -- --
69.69 0.389 3.19 -- 0.125 -0.279 -- -- -0.0568 8.98 1.04 16 -- --
72.56 0.398 3.19 0.112 -- -- -- -- -0.0485 -- -- -- -- --
71.4 0.395 3.19 -- 0.168 -- -- -- -0.0635 7.28 -- -- -- --
70.57 0.391 3.19 -- -- -0.298 -- -- -0.0556 -- 1.031 16 -- --
72.89 0.399 3.19 -- -- -- -- -- -0.061 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.79 wind 1.0 10 < th dose dependent rect. 2 1
2 58.25 temperature 15.0 10 > th dose independent rect. 3 23
6 58.72 wind 1.0 10 < th dose independent rect. 2 1
11 58.85 atmosphere 1010.0 30 < th dose dependent rect. 2 1
15 58.90 temperature 25.0 90 > th dose independent rect. 2 1
17 58.94 temperature 25.0 10 < th dose independent rect. 2 1
19 58.96 temperature 10.0 10 > th dose independent rect. 2 1
22 58.96 humidity 50.0 10 > th dose independent rect. 2 1
25 58.96 atmosphere 995.0 10 > th dose independent rect. 2 1
26 58.96 atmosphere 1010.0 10 < th dose independent rect. 2 1
28 58.96 radiation 1.0 10 < th dose independent rect. 2 1
33 58.96 precipitation 0.1 10 < th dose independent rect. 2 1
35 58.96 radiation 1.0 10 < th dose dependent rect. 2 1
40 58.96 precipitation 0.1 10 < th dose dependent rect. 2 1
41 58.98 humidity 50.0 10 > th dose dependent rect. 2 1
43 58.99 temperature 10.0 10 > th dose dependent rect. 2 1
44 59.00 temperature 30.0 10 < th dose dependent rect. 2 1
47 59.01 atmosphere 1005.0 90 > th dose dependent rect. 2 1
48 59.02 humidity 90.0 10 > th dose independent rect. 2 1
52 59.06 atmosphere 995.0 30 > th dose independent rect. 3 23
61 59.10 atmosphere 1005.0 10 > th dose independent rect. 2 1
64 59.10 atmosphere 995.0 10 > th dose dependent rect. 2 1
113 59.32 wind 1.0 30 > th dose independent rect. 2 1
114 59.36 radiation 1.0 43200 < th dose dependent rect. 3 1
115 59.58 precipitation 0.1 30 < th dose independent rect. 3 23
116 59.58 precipitation 0.1 30 < th dose dependent rect. 3 23
123 59.81 wind 9.0 30 < th dose independent rect. 3 23
140 60.19 wind 9.0 1440 < th dose independent rect. 3 1
141 60.19 temperature 10.0 1440 > th dose independent rect. 3 1
144 60.19 temperature 30.0 1440 < th dose independent rect. 3 1
148 60.19 humidity 50.0 1440 > th dose independent rect. 3 1
157 60.19 atmosphere 995.0 1440 > th dose independent rect. 3 1
158 60.19 radiation 1.0 1440 < th dose independent rect. 3 1
178 60.19 temperature 10.0 1440 > th dose independent rect. 4 23
200 60.98 wind 1.0 10 < th dose independent rect. 15 12
202 61.00 wind 1.0 10 < th dose independent rect. 17 10
204 61.02 wind 1.0 10 < th dose independent rect. 21 6
216 61.37 humidity 50.0 30 > th dose independent rect. 3 23
246 62.51 wind 1.0 10 < th dose independent rect. 7 20
252 62.54 humidity 90.0 90 < th dose independent rect. 2 1
352 63.81 wind 1.0 30 < th dose dependent rect. 21 6
401 64.38 humidity 90.0 10 > th dose independent rect. 24 3
403 64.38 atmosphere 1015.0 30 < th dose independent rect. 3 23
412 64.46 wind 1.0 10 > th dose independent sin 16 NA
434 64.78 humidity 50.0 720 > th dose independent rect. 3 8
474 65.21 radiation 20.0 30 < th dose dependent rect. 3 23
505 65.53 wind 1.0 10 < th dose independent sin 17 NA
514 65.54 temperature 25.0 10 < th dose independent rect. 24 3
544 65.60 wind 1.0 30 > th dose independent rect. 3 23
545 65.60 temperature 30.0 30 < th dose independent rect. 3 23
556 65.68 humidity 50.0 30 > th dose dependent rect. 3 23
568 65.74 temperature 10.0 720 > th dose independent rect. 15 8
571 65.74 temperature 10.0 720 > th dose independent rect. 23 16
578 65.78 radiation 10.0 30 < th dose independent rect. 3 23
589 65.83 temperature 10.0 720 > th dose independent rect. 3 8
590 65.83 atmosphere 995.0 720 > th dose independent rect. 3 8
591 65.83 temperature 10.0 720 > th dose independent rect. 11 16
640 65.94 wind 9.0 720 < th dose independent rect. 3 8
644 65.95 radiation 40.0 720 < th dose independent rect. 15 8
648 65.97 wind 1.0 30 > th dose dependent rect. 2 1
683 66.00 temperature 10.0 90 > th dose dependent rect. 3 22
689 66.02 radiation 40.0 90 < th dose independent rect. 12 15
747 66.14 humidity 50.0 90 > th dose independent rect. 3 9
768 66.15 atmosphere 995.0 720 > th dose independent rect. 23 16
793 66.26 atmosphere 1015.0 720 < th dose independent rect. 3 8
839 66.48 temperature 15.0 90 > th dose independent rect. 14 11
873 66.53 temperature 30.0 10 > th dose independent rect. 10 1
918 66.67 wind 9.0 30 < th dose dependent rect. 3 23
923 66.70 wind 1.0 10 > th dose independent rect. 14 23
927 66.71 precipitation 0.1 720 < th dose independent rect. 15 8
931 66.71 precipitation 0.1 720 < th dose dependent rect. 15 8
945 66.74 humidity 90.0 10 > th dose independent rect. 22 5
965 66.77 atmosphere 995.0 30 > th dose dependent rect. 3 23
970 66.80 wind 1.0 10 > th dose independent no NA NA
973 66.80 wind 9.0 10 < th dose dependent rect. 13 15
976 66.81 humidity 50.0 90 > th dose independent rect. 1 14
981 66.82 precipitation 0.1 720 < th dose independent rect. 23 16
983 66.82 radiation 40.0 90 < th dose dependent rect. 12 15
984 66.82 precipitation 0.1 720 < th dose dependent rect. 23 16
986 66.83 humidity 50.0 90 > th dose independent rect. 3 12
991 66.85 humidity 50.0 10 > th dose independent rect. 2 12