Os01g0186700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase GhCLK1 (Fragment).
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Os01g0186700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase GhCLK1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.45 | 0.228 | 12.8 | 0.00385 | 0.347 | -0.18 | -0.039 | -4.71 | 0.332 | 1.96 | 30.2 | 780 | -- | -- |
| 25.61 | 0.236 | 12.7 | 0.518 | 0.411 | -0.5 | 0.073 | -- | 0.358 | 3 | 29.9 | 969 | -- | -- |
| 23.43 | 0.225 | 12.8 | 0.0203 | 0.35 | -0.209 | -- | -4.41 | 0.33 | 1.99 | 30.03 | 786 | -- | -- |
| 24.9 | 0.232 | 12.7 | 0.551 | 0.348 | -0.659 | -- | -- | 0.351 | 1.86 | 30 | 828 | -- | -- |
| 29.75 | 0.254 | 12.8 | 0.13 | -- | -0.253 | -- | -4.53 | 0.359 | -- | 30.3 | 658 | -- | -- |
| 36.65 | 0.284 | 12.7 | 0.422 | 0.384 | -- | 0.141 | -- | 0.425 | 3.73 | -- | -- | -- | -- |
| 36.71 | 0.284 | 12.7 | 0.419 | 0.384 | -- | -- | -- | 0.425 | 3.62 | -- | -- | -- | -- |
| 28.19 | 0.247 | 12.7 | 0.532 | -- | -0.651 | -- | -- | 0.474 | -- | 29.11 | 352 | -- | -- |
| 32.39 | 0.265 | 12.7 | -- | 0.334 | -0.621 | -- | -- | 0.314 | 2.03 | 30.2 | 708 | -- | -- |
| 44.9 | 0.313 | 12.7 | 0.435 | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
| 41.34 | 0.301 | 12.7 | -- | 0.392 | -- | -- | -- | 0.378 | 3.61 | -- | -- | -- | -- |
| 35.54 | 0.278 | 12.7 | -- | -- | -0.609 | -- | -- | 0.407 | -- | 29.22 | 342 | -- | -- |
| 49.9 | 0.33 | 12.7 | -- | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.26 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 7 | 23.63 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 23 |
| 9 | 23.67 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 10 |
| 23 | 23.69 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 117 | 23.74 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 23 |
| 118 | 23.77 | temperature | 30 | 720 | > th | dose independent | sin | 22 | NA |
| 120 | 23.77 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 159 | 23.85 | temperature | 30 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 175 | 24.00 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 23 |
| 177 | 24.01 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 179 | 24.02 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 23 |
| 207 | 24.14 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 13 |
| 214 | 24.20 | temperature | 30 | 720 | > th | dose independent | sin | 10 | NA |
| 222 | 24.24 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 223 | 24.24 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 317 | 24.25 | temperature | 30 | 720 | > th | dose dependent | sin | 0 | NA |
| 401 | 24.37 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 23 |
| 445 | 24.44 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 449 | 24.47 | temperature | 30 | 720 | < th | dose independent | sin | 4 | NA |
| 455 | 24.48 | temperature | 30 | 720 | > th | dose dependent | sin | 9 | NA |
| 474 | 24.60 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 19 |
| 477 | 24.61 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 18 |
| 513 | 24.67 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 7 |
| 692 | 24.81 | temperature | 30 | 720 | < th | dose independent | sin | 17 | NA |
| 807 | 24.99 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 14 |