Os01g0186200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phototropin.
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Os01g0186200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phototropin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.44 | 0.394 | 11.5 | -1.71 | 2.03 | -1.18 | 1.11 | 0.85 | -0.303 | 13.2 | 24.1 | 914 | -- | -- |
| 70.73 | 0.392 | 11.5 | -1.88 | 2.03 | -1.12 | 1.1 | -- | -0.332 | 13.1 | 23.78 | 917 | -- | -- |
| 75.16 | 0.404 | 11.5 | -1.66 | 2.02 | -1.12 | -- | 0.784 | -0.309 | 12.9 | 24.5 | 1056 | -- | -- |
| 75.06 | 0.404 | 11.5 | -1.87 | 2.02 | -1.08 | -- | -- | -0.361 | 13 | 23.99 | 968 | -- | -- |
| 299.28 | 0.806 | 11.4 | -1.24 | -- | -2.14 | -- | 1.74 | -0.168 | -- | 24.1 | 1002 | -- | -- |
| 99.49 | 0.468 | 11.5 | -2.18 | 2.26 | -- | 1.19 | -- | -0.483 | 12.7 | -- | -- | -- | -- |
| 105.52 | 0.481 | 11.5 | -2.14 | 2.25 | -- | -- | -- | -0.477 | 12.7 | -- | -- | -- | -- |
| 301.51 | 0.809 | 11.5 | -1.66 | -- | -1.97 | -- | -- | -0.261 | -- | 24.1 | 1000 | -- | -- |
| 88.52 | 0.438 | 11.3 | -- | 2.21 | -1.87 | -- | -- | 0.328 | 12.7 | 12.33 | 47520 | -- | -- |
| 422.89 | 0.961 | 11.5 | -2.22 | -- | -- | -- | -- | -0.517 | -- | -- | -- | -- | -- |
| 225.86 | 0.703 | 11.4 | -- | 2.29 | -- | -- | -- | -0.239 | 12.8 | -- | -- | -- | -- |
| 369.21 | 0.895 | 11.4 | -- | -- | -2.37 | -- | -- | -0.0495 | -- | 24 | 1017 | -- | -- |
| 552.66 | 1.1 | 11.5 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 14 | 70.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 22 | 70.99 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 22 |
| 24 | 71.04 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 19 |
| 26 | 71.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 32 | 71.28 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 20 |
| 49 | 71.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 54 | 71.82 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 14 |
| 69 | 72.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 14 |
| 72 | 72.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 82 | 72.27 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 7 |
| 93 | 72.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 101 | 72.35 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 13 |
| 117 | 72.46 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 121 | 72.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 131 | 72.53 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 20 |
| 148 | 72.58 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 10 |
| 152 | 72.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 158 | 72.62 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 23 |
| 166 | 72.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 173 | 72.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 20 |
| 179 | 72.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 8 |
| 190 | 72.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 22 |
| 195 | 72.72 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 196 | 72.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 4 |
| 201 | 72.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 263 | 72.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 19 |
| 264 | 72.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 282 | 72.83 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 314 | 72.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 322 | 72.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 19 |
| 324 | 72.88 | temperature | 30 | 720 | < th | dose independent | sin | 16 | NA |
| 334 | 72.89 | humidity | 50 | 270 | > th | dose dependent | rect. | 12 | 13 |
| 389 | 72.98 | temperature | 30 | 720 | < th | dose independent | sin | 20 | NA |
| 428 | 73.05 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 443 | 73.07 | temperature | 20 | 4320 | > th | dose dependent | sin | 7 | NA |
| 455 | 73.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 494 | 73.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 21 |
| 501 | 73.14 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 508 | 73.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 539 | 73.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 557 | 73.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 600 | 73.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 639 | 73.26 | temperature | 25 | 1440 | > th | dose dependent | sin | 3 | NA |
| 674 | 73.28 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 19 |
| 681 | 73.29 | temperature | 25 | 4320 | < th | dose independent | sin | 4 | NA |
| 701 | 73.30 | temperature | 25 | 4320 | > th | dose dependent | sin | 16 | NA |
| 719 | 73.31 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 23 |
| 725 | 73.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 14 |
| 737 | 73.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 821 | 73.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 21 |
| 846 | 73.38 | temperature | 30 | 720 | > th | dose independent | sin | 18 | NA |
| 847 | 73.38 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 848 | 73.38 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 901 | 73.40 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 906 | 73.40 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 20 |
| 958 | 73.42 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 961 | 73.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 995 | 73.43 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |