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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0186000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 10.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.91 (0.0851) R2 : 0.599
β1 : 0.908 (0.571) R2dD : 0.0181 R2D : -0.22
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.8 (0.309) R2dE : 0.675 R2E : 0.286
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 17.4 (2.43) R2dD*E : 0.411 R2D*E : -0.0478
γ1 : 0.412 (0.162) R2dN8 : 0.0135 R2N8 : -0.0469
σ : 1.03
deviance : 489.76
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.55
memory length : 1723
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
480.6 1.03 5.9 1.23 0.449 -5.17 -0.277 19.6 0.435 19.1 26.66 1787 -- --
550.09 1.09 6.12 -1.45 0.0421 -4.42 -0.538 -- 0.722 4.73 13.14 7684 -- --
480.63 1.02 5.9 1.22 0.475 -5.17 -- 19.5 0.448 19.1 26.6 1803 -- --
521.21 1.06 6.19 -2.62 0.057 -2.83 -- -- 0.37 18.1 25.21 7667 -- --
489.76 1.03 5.91 0.908 -- -4.8 -- 17.4 0.412 -- 26.55 1723 -- --
842.39 1.36 6.41 -3.8 0.0319 -- -0.649 -- -0.509 1.94 -- -- -- --
843.96 1.36 6.41 -3.78 0.0463 -- -- -- -0.505 4.82 -- -- -- --
520.65 1.06 6.22 -2.73 -- -2.84 -- -- 0.331 -- 25.93 7615 -- --
597.59 1.14 6.06 -- 0.166 -5.2 -- -- 1.05 23.8 12.11 7730 -- --
844.07 1.36 6.41 -3.78 -- -- -- -- -0.504 -- -- -- -- --
1221.35 1.63 6.31 -- 0.0372 -- -- -- -0.0838 13.3 -- -- -- --
595.8 1.14 6.06 -- -- -4 -- -- 1.05 -- 14.94 26476 -- --
1221.44 1.63 6.31 -- -- -- -- -- -0.0844 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 501.82 temperature 25 1440 > th dose dependent rect. 6 16
2 501.84 temperature 25 1440 > th dose dependent rect. 6 14
50 505.05 temperature 25 1440 > th dose dependent sin 22 NA
52 505.15 temperature 25 1440 > th dose dependent rect. 13 22
62 505.94 temperature 25 1440 > th dose dependent rect. 15 4
92 507.21 temperature 25 1440 > th dose dependent rect. 16 1
122 508.28 temperature 25 1440 > th dose dependent rect. 21 23
126 508.41 temperature 25 1440 > th dose dependent no NA NA
173 510.23 temperature 25 720 > th dose dependent rect. 18 17
294 519.02 temperature 25 720 > th dose dependent sin 8 NA
298 519.31 temperature 25 1440 > th dose dependent rect. 7 1
384 531.96 temperature 30 1440 < th dose independent rect. 18 21
395 533.29 temperature 30 1440 < th dose independent rect. 9 23
396 533.33 temperature 30 1440 < th dose independent rect. 9 20
400 533.39 temperature 30 1440 < th dose independent rect. 9 10
402 533.43 temperature 30 1440 < th dose independent rect. 9 15
403 533.44 temperature 30 1440 < th dose independent rect. 9 12
423 534.79 temperature 30 1440 < th dose independent rect. 13 23
428 535.09 temperature 30 1440 < th dose independent rect. 1 18
431 535.13 temperature 30 1440 < th dose independent rect. 1 23
432 535.14 temperature 30 1440 < th dose independent rect. 23 20
433 535.14 temperature 30 1440 < th dose independent rect. 7 22
435 535.15 temperature 30 1440 < th dose independent rect. 1 20
437 535.15 temperature 30 1440 < th dose independent rect. 20 23
440 535.19 temperature 30 1440 < th dose independent rect. 7 12
447 535.23 temperature 30 1440 < th dose independent rect. 7 17
453 535.25 temperature 30 1440 < th dose independent rect. 7 14
463 535.29 temperature 30 1440 < th dose independent no NA NA
532 535.93 temperature 30 1440 < th dose independent sin 2 NA
545 536.25 temperature 30 1440 < th dose independent rect. 9 6
560 536.62 temperature 30 1440 > th dose independent rect. 9 10
615 537.30 temperature 30 1440 > th dose independent rect. 18 21
653 537.64 temperature 30 1440 > th dose independent rect. 14 22
850 539.03 temperature 30 1440 < th dose independent rect. 1 14
855 539.09 temperature 30 1440 > th dose independent no NA NA
951 539.14 temperature 30 1440 < th dose independent rect. 23 16
957 539.19 temperature 30 1440 < th dose independent rect. 20 19
961 539.24 temperature 30 1440 < th dose independent rect. 7 8