Os01g0185900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY 1 (Fragment).
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Os01g0185900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 423.28 | 0.967 | 4.96 | 0.575 | 2.65 | 2.48 | 0.64 | 2.84 | 0.253 | 1.3 | 58 | 1321 | -- | -- |
| 435.09 | 0.971 | 4.95 | 0.91 | 2.65 | 2.63 | 0.397 | -- | 0.3 | 1.32 | 55.74 | 1315 | -- | -- |
| 424.45 | 0.96 | 4.96 | 0.6 | 2.46 | 2.4 | -- | 2.68 | 0.252 | 1.34 | 57.74 | 1397 | -- | -- |
| 435.6 | 0.972 | 4.95 | 0.92 | 2.67 | 2.65 | -- | -- | 0.293 | 1.33 | 55 | 1309 | -- | -- |
| 567.1 | 1.12 | 4.92 | 0.755 | -- | 2.57 | -- | 0.99 | 0.29 | -- | 61.57 | 1662 | -- | -- |
| 593.83 | 1.14 | 4.98 | 0.785 | 2.3 | -- | 0.0252 | -- | 0.15 | 1.21 | -- | -- | -- | -- |
| 593.83 | 1.14 | 4.98 | 0.784 | 2.3 | -- | -- | -- | 0.149 | 1.21 | -- | -- | -- | -- |
| 570.03 | 1.12 | 4.93 | 0.787 | -- | 2.63 | -- | -- | 0.287 | -- | 60.77 | 1661 | -- | -- |
| 456.63 | 0.995 | 4.97 | -- | 2.75 | 2.7 | -- | -- | 0.215 | 1.3 | 58 | 1278 | -- | -- |
| 920.19 | 1.42 | 4.95 | 0.873 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 610.05 | 1.16 | 5 | -- | 2.31 | -- | -- | -- | 0.062 | 1.22 | -- | -- | -- | -- |
| 586.36 | 1.13 | 4.95 | -- | -- | 2.64 | -- | -- | 0.2 | -- | 60.77 | 1661 | -- | -- |
| 940.3 | 1.43 | 4.97 | -- | -- | -- | -- | -- | 0.0991 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 408.62 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 2 | 409.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 7 | 412.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 9 | 413.73 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 17 | 415.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 18 | 415.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 23 | 416.01 | humidity | 90 | 1440 | < th | dose dependent | rect. | 19 | 19 |
| 24 | 416.24 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 29 | 416.81 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 10 |
| 43 | 416.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 44 | 417.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 50 | 417.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 73 | 418.45 | humidity | 60 | 1440 | > th | dose dependent | sin | 2 | NA |
| 81 | 418.85 | humidity | 70 | 1440 | > th | dose independent | sin | 3 | NA |
| 149 | 421.06 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 205 | 422.17 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 20 |
| 207 | 422.20 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 211 | 422.30 | humidity | 90 | 1440 | < th | dose dependent | sin | 5 | NA |
| 218 | 422.42 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 292 | 423.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 328 | 423.78 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 373 | 424.13 | humidity | 80 | 1440 | < th | dose dependent | sin | 8 | NA |
| 386 | 424.15 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 387 | 424.16 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 533 | 424.91 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 606 | 425.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 607 | 425.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 612 | 425.70 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 12 |
| 617 | 425.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 633 | 425.83 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 635 | 425.86 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 637 | 425.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 640 | 425.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 16 |
| 649 | 425.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 652 | 425.93 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 678 | 425.99 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 687 | 426.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 730 | 426.23 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 734 | 426.26 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 787 | 426.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 789 | 426.94 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 826 | 427.32 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 954 | 428.21 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 23 |