Os01g0185400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0185400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.3 | 0.259 | 10.9 | 0.332 | 0.17 | -0.598 | 0.0692 | -0.218 | 0.294 | 23.5 | 20.5 | 308 | -- | -- |
| 30.47 | 0.257 | 10.9 | 0.296 | 0.173 | -0.581 | 0.0617 | -- | 0.29 | 23.5 | 20.49 | 305 | -- | -- |
| 30.23 | 0.256 | 10.9 | 0.334 | 0.146 | -0.58 | -- | -0.207 | 0.281 | 23.6 | 20.7 | 371 | -- | -- |
| 30.34 | 0.257 | 10.9 | 0.282 | 0.145 | -0.563 | -- | -- | 0.272 | 23.7 | 20.8 | 358 | -- | -- |
| 31.04 | 0.259 | 10.9 | 0.344 | -- | -0.586 | -- | -0.317 | 0.27 | -- | 21 | 539 | -- | -- |
| 41.4 | 0.302 | 10.9 | 0.48 | 0.163 | -- | 0.178 | -- | 0.403 | 21.4 | -- | -- | -- | -- |
| 41.51 | 0.302 | 10.9 | 0.473 | 0.162 | -- | -- | -- | 0.403 | 21.5 | -- | -- | -- | -- |
| 30.58 | 0.258 | 10.9 | 0.164 | -- | -0.663 | -- | -- | 0.199 | -- | 21.5 | 2134 | -- | -- |
| 30.71 | 0.258 | 10.9 | -- | 0.108 | -0.628 | -- | -- | 0.19 | 22.5 | 21.5 | 2057 | -- | -- |
| 43.05 | 0.307 | 10.9 | 0.475 | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
| 47.42 | 0.322 | 10.9 | -- | 0.163 | -- | -- | -- | 0.35 | 21.7 | -- | -- | -- | -- |
| 31.14 | 0.26 | 10.9 | -- | -- | -0.731 | -- | -- | 0.174 | -- | 21.32 | 2162 | -- | -- |
| 48.99 | 0.327 | 10.9 | -- | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 2 | 28.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 5 | 29.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 7 | 29.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 15 | 29.37 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 23 |
| 52 | 30.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 54 | 30.12 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 55 | 30.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 71 | 30.26 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 75 | 30.30 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 77 | 30.31 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 22 |
| 79 | 30.33 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 18 |
| 89 | 30.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 90 | 30.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 104 | 30.41 | temperature | 20 | 270 | < th | dose independent | sin | 10 | NA |
| 117 | 30.44 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 126 | 30.46 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 138 | 30.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 148 | 30.52 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 162 | 30.53 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 167 | 30.54 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 169 | 30.55 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 182 | 30.56 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 184 | 30.57 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 203 | 30.58 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 276 | 30.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 289 | 30.72 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 322 | 30.76 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 23 |
| 331 | 30.78 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 365 | 30.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 399 | 30.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 423 | 30.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 456 | 30.92 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 483 | 30.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 499 | 30.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 506 | 30.97 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 531 | 30.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 593 | 31.05 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 594 | 31.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 641 | 31.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 673 | 31.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 705 | 31.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 710 | 31.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 715 | 31.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 717 | 31.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 809 | 31.25 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 827 | 31.27 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 928 | 31.37 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 943 | 31.38 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 8 |
| 950 | 31.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 983 | 31.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 997 | 31.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |