Os01g0184300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0184300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Nucleic acid-binding, OB-fold domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.23 | 0.48 | 11.1 | -1 | 0.0562 | 1.43 | 0.786 | 0.033 | 0.16 | 4.59 | 24.29 | 938 | -- | -- |
| 104.22 | 0.475 | 11.1 | -0.995 | 0.0542 | 1.44 | 0.784 | -- | 0.158 | 4.63 | 24.12 | 939 | -- | -- |
| 105.83 | 0.479 | 11.1 | -0.984 | 0.0578 | 1.44 | -- | -0.0539 | 0.159 | 3.97 | 24.13 | 945 | -- | -- |
| 105.83 | 0.479 | 11.1 | -0.992 | 0.0617 | 1.46 | -- | -- | 0.158 | 3.98 | 24.1 | 944 | -- | -- |
| 106.03 | 0.48 | 11.1 | -0.988 | -- | 1.44 | -- | -0.0509 | 0.157 | -- | 24.1 | 937 | -- | -- |
| 134.66 | 0.544 | 11.1 | -1.4 | 0.022 | -- | -0.846 | -- | -0.12 | 16.1 | -- | -- | -- | -- |
| 135.3 | 0.545 | 11.1 | -1.41 | 0.152 | -- | -- | -- | -0.125 | 10.2 | -- | -- | -- | -- |
| 106.03 | 0.48 | 11.1 | -0.998 | -- | 1.44 | -- | -- | 0.156 | -- | 24.1 | 937 | -- | -- |
| 120.8 | 0.512 | 11 | -- | 0.0345 | 1.85 | -- | -- | 0.342 | 4.13 | 22.57 | 3741 | -- | -- |
| 136.7 | 0.546 | 11.1 | -1.41 | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
| 187.7 | 0.641 | 11.1 | -- | 0.161 | -- | -- | -- | 0.0322 | 10.9 | -- | -- | -- | -- |
| 120.83 | 0.512 | 11 | -- | -- | 1.86 | -- | -- | 0.349 | -- | 22.58 | 3733 | -- | -- |
| 189.31 | 0.642 | 11.1 | -- | -- | -- | -- | -- | 0.0315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 5 | 95.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 11 | 97.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 22 | 97.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 32 | 98.02 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 41 | 98.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 48 | 98.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 61 | 98.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 69 | 98.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 76 | 98.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 77 | 98.90 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 84 | 99.04 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 155 | 99.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 186 | 100.06 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 187 | 100.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 196 | 100.12 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 209 | 100.21 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 235 | 100.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 283 | 100.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 287 | 100.91 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 341 | 101.31 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 411 | 101.72 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 442 | 101.93 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 483 | 102.17 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 18 |
| 589 | 102.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 640 | 102.97 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 16 |
| 654 | 103.03 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 21 |
| 726 | 103.34 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 848 | 103.95 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 850 | 103.96 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 868 | 104.05 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |