Os01g0182700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 34.
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Os01g0182700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 34.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.85 | 0.504 | 6.77 | 0.385 | 0.736 | 0.984 | -0.489 | -9.07 | 0.135 | 0.245 | 26.9 | 4796 | -- | -- |
| 128.21 | 0.531 | 6.54 | 2.35 | 0.836 | 0.48 | -0.424 | -- | 0.416 | 0.335 | 14.72 | 35705 | -- | -- |
| 115.75 | 0.501 | 6.76 | 0.438 | 0.737 | 0.978 | -- | -8.99 | 0.14 | 0.356 | 27 | 4919 | -- | -- |
| 128.93 | 0.532 | 6.54 | 2.36 | 0.846 | 0.522 | -- | -- | 0.413 | 0.431 | -5.304 | 47520 | -- | -- |
| 146.41 | 0.564 | 6.73 | 0.614 | -- | 1.14 | -- | -8.91 | 0.177 | -- | 26.52 | 3773 | -- | -- |
| 130.45 | 0.535 | 6.52 | 2.44 | 0.717 | -- | -0.501 | -- | 0.484 | 24 | -- | -- | -- | -- |
| 131.53 | 0.537 | 6.52 | 2.46 | 0.719 | -- | -- | -- | 0.486 | 0.0554 | -- | -- | -- | -- |
| 150.45 | 0.571 | 6.54 | 2.23 | -- | 0.922 | -- | -- | 0.347 | -- | 13.92 | 923 | -- | -- |
| 166.3 | 0.601 | 6.7 | -- | 0.688 | 1.8 | -- | -- | -0.325 | 0.0352 | -0.8433 | 47520 | -- | -- |
| 164.1 | 0.599 | 6.5 | 2.48 | -- | -- | -- | -- | 0.496 | -- | -- | -- | -- | -- |
| 291.09 | 0.798 | 6.58 | -- | 0.753 | -- | -- | -- | 0.212 | 0.239 | -- | -- | -- | -- |
| 196.01 | 0.652 | 6.69 | -- | -- | 1.84 | -- | -- | -0.33 | -- | -0.2354 | 47520 | -- | -- |
| 326.75 | 0.844 | 6.57 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.62 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 2 | 109.76 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 3 | 110.04 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 6 | 112.09 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 7 | 112.09 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 10 | 112.60 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 13 | 112.81 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 22 | 113.88 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 24 | 114.13 | wind | 3.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 26 | 114.33 | wind | 3.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 34 | 114.51 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 38 | 114.66 | radiation | 10.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 39 | 114.66 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 40 | 114.66 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 41 | 114.67 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 43 | 114.69 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 45 | 114.70 | humidity | 50.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 48 | 114.71 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 52 | 114.73 | humidity | 90.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 78 | 114.81 | wind | 7.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 82 | 114.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 84 | 114.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 85 | 114.82 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 88 | 114.82 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 1 |
| 89 | 114.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 91 | 114.82 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 95 | 114.84 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 98 | 114.85 | radiation | 30.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 113 | 114.91 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 141 | 114.98 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 144 | 114.99 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 162 | 115.04 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 171 | 115.06 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 187 | 115.09 | temperature | 30.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 204 | 115.14 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 206 | 115.14 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 211 | 115.15 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 248 | 115.23 | humidity | 70.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 263 | 115.25 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 19 |
| 296 | 115.29 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 305 | 115.29 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 315 | 115.31 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 339 | 115.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 344 | 115.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 443 | 115.58 | wind | 9.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 447 | 115.60 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 458 | 115.61 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 546 | 115.89 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 559 | 115.96 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 582 | 116.07 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 583 | 116.07 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 601 | 116.12 | temperature | 25.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 603 | 116.12 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 8 |
| 605 | 116.12 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 606 | 116.12 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 685 | 116.24 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 726 | 116.33 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 824 | 116.47 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 16 |
| 825 | 116.47 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 828 | 116.47 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 833 | 116.49 | temperature | 30.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 866 | 116.50 | temperature | 25.0 | 14400 | < th | dose independent | sin | 7 | NA |