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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0180000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pistil-specific extensin-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.86 (0.0482) R2 : 0.714
β1 : 1.28 (0.176) R2dD : 0.0346 R2D : 0.0419
β2 : 6.6 (0.232) R2dC : 1.81 R2C : 0.108
β3 : -5.25 (0.331) R2dE : 0.558 R2E : -1.14
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.143 (0.102) R2dN8 : 0.00164 R2N8 : -0.00953
σ : 0.897
deviance : 370.58
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_____
C
peak time of C : 7.55
E
wheather : humidity
threshold : 71.37
memory length : 1080
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.21
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.37 0.884 4.86 1.24 6.25 -4.85 3.37 -1.46 -0.1 7.53 70.04 1110 7.37 --
354.64 0.877 4.87 1.23 6.12 -4.66 2.48 -- -0.121 7.35 70.81 1106 7.77 --
361.31 0.885 4.87 1.11 6.56 -5.28 -- 2.6 -0.15 7.62 71 1103 7.21 --
370.58 0.897 4.86 1.28 6.6 -5.25 -- -- -0.143 7.55 71.37 1080 7.21 --
840.84 1.36 5.01 1.52 -- -2.54 -- -1.24 0.00135 -- 51.02 1518 8.99 --
499.21 1.05 4.94 1.42 3.67 -- 3 -- -0.0826 6.56 -- -- -- --
521.84 1.07 4.94 1.47 3.68 -- -- -- -0.0915 6.57 -- -- -- --
639.12 1.18 5.02 1.52 -- -3.28 -- -- -0.0567 -- 34.98 1440 9.97 --
412.21 0.946 4.88 -- 6.65 -5.42 -- -- -0.25 7.56 71 1098 7.3 --
1228.34 1.64 5.02 1.55 -- -- -- -- -0.0161 -- -- -- -- --
578.41 1.13 4.98 -- 3.7 -- -- -- -0.255 6.55 -- -- -- --
578.41 1.12 5.07 -- -- -3.69 -- -- -0.255 -- 34.87 1444 11.5 --
1292.1 1.68 5.05 -- -- -- -- -- -0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 375.35 humidity 90.0 720 < th dose dependent rect. 19 2
15 386.05 humidity 70.0 720 > th dose independent rect. 18 9
18 387.79 temperature 25.0 720 > th dose dependent rect. 18 3
23 388.95 humidity 70.0 720 < th dose independent rect. 18 14
24 389.28 humidity 70.0 720 > th dose dependent rect. 19 2
26 389.73 humidity 80.0 720 < th dose independent rect. 19 2
60 395.51 humidity 70.0 720 > th dose independent rect. 17 16
61 395.55 humidity 70.0 720 > th dose dependent rect. 18 5
65 396.23 humidity 80.0 720 < th dose dependent rect. 18 14
74 397.55 humidity 50.0 720 > th dose dependent rect. 17 8
82 398.16 humidity 70.0 720 > th dose independent sin 12 NA
122 399.98 humidity 70.0 1440 < th dose independent sin 12 NA
139 400.88 temperature 25.0 720 > th dose dependent rect. 18 13
141 400.92 humidity 70.0 720 > th dose independent rect. 16 4
150 401.27 humidity 90.0 720 < th dose independent rect. 18 6
196 403.23 humidity 70.0 1440 < th dose independent rect. 15 17
230 404.31 humidity 70.0 1440 < th dose independent rect. 15 5
342 406.21 humidity 80.0 1440 < th dose dependent rect. 16 17
366 406.86 humidity 70.0 1440 > th dose independent rect. 17 20
371 407.09 humidity 70.0 14400 < th dose independent rect. 18 2
413 407.83 humidity 70.0 1440 < th dose independent rect. 16 21
450 408.26 humidity 80.0 1440 < th dose dependent rect. 16 21
453 408.29 temperature 30.0 1440 > th dose independent rect. 16 3
483 408.44 temperature 30.0 720 < th dose independent rect. 17 10
498 408.54 humidity 90.0 720 > th dose dependent rect. 10 14
500 408.57 temperature 30.0 1440 < th dose independent rect. 16 4
504 408.61 temperature 30.0 1440 < th dose independent rect. 16 13
505 408.61 humidity 70.0 1440 < th dose independent rect. 11 21
512 408.68 temperature 30.0 1440 < th dose independent rect. 16 15
528 408.86 temperature 30.0 14400 < th dose independent rect. 18 11
543 409.06 temperature 30.0 14400 < th dose independent rect. 18 13
548 409.10 temperature 30.0 14400 > th dose independent rect. 18 1
572 409.24 humidity 80.0 1440 < th dose dependent sin 13 NA
581 409.33 humidity 70.0 1440 < th dose independent rect. 11 9
603 409.46 radiation 40.0 1440 > th dose independent rect. 14 1
609 409.56 temperature 30.0 14400 < th dose independent rect. 18 1
610 409.56 humidity 50.0 1440 > th dose dependent rect. 3 20
611 409.57 humidity 50.0 1440 > th dose dependent rect. 3 18
648 409.82 humidity 50.0 1440 > th dose dependent rect. 5 18
664 410.00 radiation 40.0 1440 > th dose independent rect. 14 19
710 410.28 humidity 80.0 1440 < th dose dependent rect. 11 22
732 410.50 humidity 70.0 1440 > th dose independent rect. 11 23
735 410.51 humidity 50.0 720 > th dose dependent rect. 16 16
759 410.69 humidity 90.0 1440 < th dose dependent rect. 3 20
798 410.84 humidity 90.0 1440 < th dose dependent rect. 3 18
868 411.31 temperature 30.0 14400 > th dose dependent rect. 17 2
886 411.37 humidity 60.0 720 > th dose dependent sin 15 NA
950 411.69 precipitation 0.1 43200 < th dose independent rect. 19 2
951 411.69 precipitation 0.1 43200 < th dose dependent rect. 19 2
972 411.79 humidity 50.0 1440 > th dose dependent rect. 11 22