Os01g0178300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0178300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.09 | 0.484 | 7.37 | -0.572 | 0.926 | 1.63 | -1.19 | -0.694 | -0.41 | 8.92 | 11.24 | 983 | -- | -- |
| 106.46 | 0.481 | 7.36 | -0.441 | 0.932 | 1.63 | -1.08 | -- | -0.377 | 8.89 | 12.4 | 984 | -- | -- |
| 110.31 | 0.489 | 7.35 | -0.449 | 0.979 | 1.67 | -- | 0.128 | -0.372 | 8.68 | 14.11 | 922 | -- | -- |
| 110.32 | 0.489 | 7.35 | -0.476 | 0.982 | 1.67 | -- | -- | -0.375 | 8.68 | 14.2 | 923 | -- | -- |
| 141.15 | 0.553 | 7.37 | -0.389 | -- | 1.47 | -- | 0.143 | -0.335 | -- | 14.8 | 1422 | -- | -- |
| 145.21 | 0.565 | 7.3 | 0.0171 | 0.713 | -- | -1.15 | -- | -0.106 | 8.23 | -- | -- | -- | -- |
| 149.02 | 0.572 | 7.3 | -0.0194 | 0.724 | -- | -- | -- | -0.107 | 7.9 | -- | -- | -- | -- |
| 140.75 | 0.553 | 7.38 | -0.476 | -- | 1.46 | -- | -- | -0.366 | -- | 14.28 | 1421 | -- | -- |
| 114.41 | 0.498 | 7.34 | -- | 1.14 | 1.54 | -- | -- | -0.299 | 7.19 | 15.77 | 409 | -- | -- |
| 177.49 | 0.623 | 7.32 | -0.0114 | -- | -- | -- | -- | -0.0972 | -- | -- | -- | -- | -- |
| 149.03 | 0.571 | 7.3 | -- | 0.724 | -- | -- | -- | -0.105 | 7.9 | -- | -- | -- | -- |
| 145.95 | 0.563 | 7.36 | -- | -- | 1.26 | -- | -- | -0.284 | -- | 7.353 | 1417 | -- | -- |
| 177.49 | 0.622 | 7.32 | -- | -- | -- | -- | -- | -0.0959 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 11 | 95.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 13 | 96.00 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 32 | 97.58 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 45 | 98.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 70 | 99.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 72 | 99.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 109 | 100.44 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 113 | 100.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 130 | 100.72 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 191 | 101.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 235 | 102.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 261 | 102.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 353 | 103.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 376 | 104.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 507 | 105.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 510 | 105.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 595 | 105.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 642 | 105.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 704 | 106.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 726 | 106.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 880 | 107.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 927 | 107.37 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 936 | 107.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 972 | 107.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 979 | 107.61 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |