Os01g0178000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase, class I and II domain containing protein.
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Os01g0178000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminotransferase, class I and II domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.72 | 0.338 | 12.1 | 0.0241 | 0.532 | -1.77 | -0.139 | 0.891 | 0.0265 | 13.7 | 1.47 | 257 | 4 | -- |
| 52.91 | 0.339 | 12.1 | 0.0153 | 0.544 | -1.8 | 0.186 | -- | 0.011 | 14 | 1.48 | 263 | 4.17 | -- |
| 51.7 | 0.335 | 12.1 | 0.024 | 0.529 | -1.78 | -- | 0.802 | 0.0297 | 13.9 | 1.472 | 260 | 4.13 | -- |
| 53.15 | 0.34 | 12.1 | 0.0251 | 0.529 | -1.77 | -- | -- | 0.0248 | 14 | 1.479 | 261 | 4.13 | -- |
| 60.65 | 0.363 | 12.1 | 0.0118 | -- | -1.45 | -- | 0.989 | 0.0654 | -- | 2.109 | 215 | 3.91 | -- |
| 96.55 | 0.461 | 12.2 | -0.0176 | 0.841 | -- | -0.432 | -- | -0.0126 | 20.8 | -- | -- | -- | -- |
| 97.18 | 0.462 | 12.2 | -0.00335 | 0.842 | -- | -- | -- | -0.0126 | 20.9 | -- | -- | -- | -- |
| 62.07 | 0.367 | 12.1 | 0.0108 | -- | -1.43 | -- | -- | 0.0465 | -- | 2.19 | 214 | 3.88 | -- |
| 53.16 | 0.34 | 12.1 | -- | 0.527 | -1.76 | -- | -- | 0.0234 | 14 | 1.47 | 261 | 4.13 | -- |
| 137.61 | 0.548 | 12.1 | -0.00349 | -- | -- | -- | -- | -0.0186 | -- | -- | -- | -- | -- |
| 97.18 | 0.461 | 12.2 | -- | 0.842 | -- | -- | -- | -0.0122 | 20.9 | -- | -- | -- | -- |
| 61.83 | 0.366 | 12.1 | -- | -- | -1.48 | -- | -- | 0.0413 | -- | 2.19 | 204 | 3.76 | -- |
| 137.61 | 0.548 | 12.1 | -- | -- | -- | -- | -- | -0.0182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.25 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 12 | 51.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 26 | 53.08 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 27 | 53.27 | radiation | 1.0 | 270 | > th | dose independent | sin | 10 | NA |
| 28 | 53.29 | radiation | 1.0 | 270 | < th | dose independent | sin | 10 | NA |
| 31 | 53.78 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 32 | 53.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 5 |
| 33 | 53.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 3 |
| 34 | 53.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 36 | 54.11 | humidity | 60.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 38 | 54.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 41 | 54.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 42 | 54.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 43 | 54.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 48 | 54.64 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 5 |
| 50 | 54.66 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 4 |
| 51 | 54.69 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 5 |
| 52 | 54.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 5 |
| 53 | 54.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 56 | 55.17 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 57 | 55.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 5 |
| 59 | 55.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 5 |
| 60 | 55.22 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 5 |
| 61 | 55.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 19 |
| 62 | 55.24 | radiation | 10.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 63 | 55.40 | radiation | 30.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 64 | 55.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 21 |
| 65 | 55.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 82 | 56.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 84 | 56.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 21 |
| 85 | 56.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 87 | 56.17 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 19 |
| 92 | 56.42 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 93 | 56.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 95 | 56.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 19 |
| 96 | 56.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 19 |
| 106 | 56.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 1 |
| 117 | 57.57 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 136 | 57.91 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 139 | 57.97 | radiation | 30.0 | 10 | < th | dose dependent | sin | 8 | NA |
| 149 | 58.24 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 1 |
| 160 | 58.55 | radiation | 1.0 | 90 | > th | dose dependent | sin | 10 | NA |
| 162 | 58.68 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 166 | 58.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 171 | 58.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 19 |
| 176 | 58.81 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 12 |
| 177 | 58.88 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 19 |
| 179 | 58.92 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 193 | 59.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 19 |
| 195 | 59.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 196 | 59.08 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 201 | 59.10 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 205 | 59.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 206 | 59.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 5 |
| 207 | 59.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 208 | 59.20 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 214 | 59.29 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 219 | 59.37 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 4 |
| 222 | 59.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 5 |
| 223 | 59.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 232 | 59.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 5 |
| 234 | 59.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 1 |
| 235 | 59.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 240 | 59.68 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 255 | 59.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 1 |
| 257 | 59.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 258 | 59.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 1 |
| 260 | 59.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 1 |
| 261 | 59.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 263 | 59.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 23 |
| 277 | 60.15 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 279 | 60.21 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 280 | 60.29 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 18 |
| 282 | 60.33 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 294 | 60.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 295 | 60.35 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 307 | 60.60 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 334 | 61.00 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 18 |
| 345 | 61.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 21 |
| 347 | 61.36 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 359 | 61.62 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 361 | 61.70 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 363 | 61.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 21 |
| 369 | 61.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 375 | 61.93 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 3 |
| 382 | 62.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 383 | 62.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 384 | 62.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 3 |
| 386 | 62.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 21 |
| 390 | 62.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 21 |
| 391 | 62.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 406 | 62.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 407 | 62.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 408 | 62.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 411 | 62.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 415 | 62.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 15 |
| 419 | 62.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 3 |
| 422 | 62.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 3 |
| 428 | 62.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 442 | 62.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 3 |
| 443 | 62.42 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 446 | 62.48 | radiation | 10.0 | 10 | > th | dose independent | sin | 8 | NA |
| 460 | 62.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 474 | 62.75 | radiation | 10.0 | 90 | < th | dose independent | rect. | 23 | 9 |
| 481 | 62.84 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 501 | 62.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 506 | 62.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 15 |
| 507 | 62.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 508 | 62.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 515 | 63.01 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 553 | 63.28 | radiation | 1.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 585 | 63.58 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 586 | 63.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 9 |
| 587 | 63.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 593 | 63.61 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 624 | 63.79 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 636 | 63.88 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 640 | 63.92 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 641 | 63.92 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 652 | 64.02 | humidity | 70.0 | 90 | > th | dose independent | rect. | 23 | 8 |
| 657 | 64.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 659 | 64.04 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 660 | 64.04 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 663 | 64.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 673 | 64.10 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 8 |
| 674 | 64.10 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 8 |
| 675 | 64.10 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 8 |
| 676 | 64.10 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 8 |
| 678 | 64.10 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 8 |
| 695 | 64.16 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 19 |
| 713 | 64.28 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 714 | 64.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 753 | 64.49 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 6 | 2 |
| 755 | 64.51 | humidity | 50.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 770 | 64.61 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 7 | 4 |
| 786 | 64.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 21 |
| 790 | 64.68 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 8 |
| 791 | 64.68 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 815 | 64.79 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 5 |
| 838 | 64.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 848 | 64.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 853 | 64.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 10 | 19 |
| 877 | 65.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 895 | 65.04 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 919 | 65.17 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 16 |
| 924 | 65.19 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 930 | 65.23 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 19 |
| 932 | 65.23 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 989 | 65.55 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 998 | 65.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 16 |