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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0176300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0296) R2 : 0.74
β1 : 1.51 (0.11) R2dD : 0.114 R2D : 0.112
β2 : 1.86 (0.0836) R2dC : 0.353 R2C : 0.49
β3 : -1.09 (0.109) R2dE : 0.0751 R2E : 0.255
β4 : 2.64 (0.318) R2dD*C : 0.0392 R2D*C : 0.0385
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.213 (0.0632) R2dN8 : 0.00865 R2N8 : -0.00534
σ : 0.552
deviance : 140.46
__
_____
C
peak time of C : 20.3
E
wheather : temperature
threshold : 29.33
memory length : 473
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.81 0.558 3.9 1.36 1.86 -1.26 2.64 1.35 0.222 20.3 29.6 472 -- --
140.46 0.552 3.89 1.51 1.86 -1.09 2.64 -- 0.213 20.3 29.33 473 -- --
161.6 0.592 3.89 1.55 1.9 -1.17 -- -0.188 0.252 20.2 29.6 476 -- --
160.81 0.591 3.89 1.4 1.8 -1.26 -- -- 0.217 20.4 29.49 476 -- --
301.35 0.809 3.88 1.66 -- -1.88 -- 0.772 0.183 -- 28.41 570 -- --
166.48 0.605 3.89 1.67 2.28 -- 3.14 -- 0.262 19.8 -- -- -- --
194.91 0.654 3.89 1.59 2.28 -- -- -- 0.267 19.8 -- -- -- --
283.55 0.784 3.89 1.15 -- -2.2 -- -- -0.0228 -- 28.2 559 -- --
211.11 0.677 3.91 -- 1.71 -1.53 -- -- 0.0929 20.5 29.6 490 -- --
476.24 1.02 3.83 1.56 -- -- -- -- 0.234 -- -- -- -- --
261.77 0.757 3.93 -- 2.27 -- -- -- 0.0892 19.8 -- -- -- --
317.37 0.83 3.93 -- -- -2.34 -- -- -0.175 -- 28.21 567 -- --
540.81 1.09 3.87 -- -- -- -- -- 0.0606 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.90 temperature 25.0 90 > th dose independent rect. 13 8
2 131.48 temperature 15.0 90 > th dose dependent rect. 13 8
8 133.35 temperature 10.0 270 > th dose dependent rect. 11 10
9 133.51 temperature 25.0 10 > th dose independent rect. 13 9
22 135.18 temperature 30.0 270 < th dose independent rect. 7 19
49 136.43 atmosphere 1015.0 90 < th dose dependent rect. 13 8
68 137.36 wind 7.0 90 < th dose independent rect. 13 8
125 138.98 temperature 25.0 90 > th dose dependent rect. 13 18
127 139.01 temperature 25.0 90 > th dose dependent rect. 13 16
130 139.03 atmosphere 1015.0 90 < th dose independent rect. 21 16
150 139.28 wind 7.0 270 < th dose independent rect. 2 16
205 140.15 radiation 10.0 270 < th dose dependent rect. 14 12
234 140.53 atmosphere 1010.0 270 < th dose independent rect. 18 8
244 140.66 temperature 25.0 270 > th dose dependent sin 19 NA
248 140.77 temperature 10.0 90 > th dose dependent rect. 4 17
250 140.80 radiation 10.0 270 < th dose dependent rect. 8 18
265 140.98 radiation 1.0 270 < th dose independent rect. 11 15
280 141.12 temperature 10.0 270 > th dose dependent rect. 2 17
305 141.34 wind 7.0 270 < th dose independent rect. 11 21
310 141.37 temperature 20.0 720 > th dose dependent rect. 13 1
315 141.42 temperature 20.0 720 > th dose dependent rect. 12 3
319 141.47 wind 7.0 270 < th dose independent rect. 13 18
330 141.56 temperature 30.0 270 < th dose independent rect. 7 9
342 141.64 radiation 40.0 270 < th dose dependent rect. 8 18
349 141.72 temperature 30.0 270 < th dose independent rect. 7 7
354 141.80 temperature 20.0 720 > th dose dependent rect. 9 6
358 141.84 temperature 30.0 270 < th dose independent rect. 18 22
364 141.88 temperature 30.0 270 < th dose independent rect. 16 10
368 141.91 radiation 40.0 270 < th dose independent rect. 8 17
394 142.11 humidity 70.0 270 > th dose independent rect. 17 9
408 142.20 humidity 50.0 270 > th dose dependent rect. 8 17
409 142.20 humidity 50.0 270 > th dose dependent rect. 7 19
424 142.33 temperature 10.0 270 > th dose dependent rect. 11 21
430 142.36 temperature 10.0 90 > th dose dependent rect. 21 16
431 142.39 atmosphere 1015.0 270 < th dose independent rect. 8 17
435 142.41 humidity 60.0 270 > th dose independent rect. 7 19
438 142.44 atmosphere 1010.0 90 < th dose independent rect. 21 6
440 142.44 temperature 10.0 270 > th dose dependent rect. 12 19
458 142.56 temperature 15.0 90 > th dose independent rect. 21 16
473 142.66 wind 9.0 90 < th dose dependent rect. 13 8
474 142.67 humidity 60.0 270 > th dose independent rect. 8 17
478 142.68 temperature 25.0 10 > th dose dependent sin 14 NA
488 142.75 humidity 50.0 270 > th dose dependent rect. 17 9
503 142.83 precipitation 0.1 90 < th dose independent rect. 13 8
504 142.83 precipitation 0.1 90 < th dose dependent rect. 13 8
506 142.86 humidity 90.0 270 < th dose independent rect. 12 9
564 143.20 temperature 10.0 90 > th dose independent rect. 13 8
566 143.20 atmosphere 1010.0 90 < th dose independent rect. 13 8
569 143.20 atmosphere 995.0 90 > th dose independent rect. 21 16
592 143.33 wind 7.0 270 < th dose independent rect. 13 5
634 143.51 wind 9.0 90 < th dose independent rect. 21 16
649 143.60 radiation 40.0 270 < th dose independent rect. 7 7
676 143.69 radiation 1.0 270 > th dose independent rect. 12 18
713 143.80 precipitation 0.1 270 < th dose independent rect. 13 18
714 143.80 precipitation 0.1 270 < th dose dependent rect. 13 18
731 143.89 precipitation 0.1 90 < th dose independent rect. 21 16
733 143.89 precipitation 0.1 90 < th dose dependent rect. 21 16
735 143.91 temperature 20.0 90 > th dose independent rect. 21 6
744 143.94 atmosphere 995.0 270 > th dose independent rect. 8 17
785 144.08 temperature 30.0 720 > th dose dependent rect. 18 19
795 144.11 wind 1.0 90 > th dose independent rect. 13 8
801 144.13 atmosphere 1015.0 270 < th dose independent rect. 8 15
821 144.22 atmosphere 1000.0 270 > th dose independent rect. 7 6
822 144.22 temperature 20.0 270 > th dose independent rect. 8 17
843 144.30 atmosphere 995.0 270 > th dose independent rect. 7 19
864 144.34 temperature 30.0 720 < th dose dependent rect. 7 11
881 144.36 temperature 30.0 270 < th dose dependent sin 20 NA
909 144.45 temperature 20.0 720 > th dose dependent sin 0 NA
933 144.49 radiation 1.0 270 > th dose independent sin 15 NA
936 144.50 radiation 10.0 270 < th dose dependent sin 15 NA