Os01g0174700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Akt (Fragment).
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Os01g0174700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Akt (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.23 | 0.349 | 9 | 0.856 | 0.862 | -1.18 | -0.0305 | -0.292 | 0.441 | 2.47 | 15.2 | 147 | -- | -- |
| 55.19 | 0.346 | 9 | 0.905 | 0.852 | -1.14 | 0.0482 | -- | 0.461 | 2.44 | 16.59 | 155 | -- | -- |
| 55.21 | 0.346 | 9 | 0.86 | 0.852 | -1.18 | -- | -0.274 | 0.44 | 2.45 | 15.57 | 149 | -- | -- |
| 55.18 | 0.346 | 9 | 0.895 | 0.86 | -1.09 | -- | -- | 0.453 | 2.43 | 16.95 | 155 | -- | -- |
| 84.12 | 0.427 | 8.96 | 1.1 | -- | -1.81 | -- | 0.0748 | 0.61 | -- | 18.48 | 87 | -- | -- |
| 70.12 | 0.393 | 9.03 | 0.652 | 1.2 | -- | 0.209 | -- | 0.285 | 2.8 | -- | -- | -- | -- |
| 70.27 | 0.393 | 9.04 | 0.647 | 1.2 | -- | -- | -- | 0.283 | 2.81 | -- | -- | -- | -- |
| 84.12 | 0.427 | 8.96 | 1.09 | -- | -1.82 | -- | -- | 0.603 | -- | 18.3 | 86 | -- | -- |
| 73.85 | 0.4 | 9.03 | -- | 0.982 | -0.667 | -- | -- | 0.306 | 2.6 | 19.27 | 150 | -- | -- |
| 154.2 | 0.58 | 9.03 | 0.698 | -- | -- | -- | -- | 0.314 | -- | -- | -- | -- | -- |
| 81.3 | 0.422 | 9.05 | -- | 1.22 | -- | -- | -- | 0.211 | 2.81 | -- | -- | -- | -- |
| 109.55 | 0.489 | 9.02 | -- | -- | -1.5 | -- | -- | 0.371 | -- | 24.2 | 49 | -- | -- |
| 167.05 | 0.603 | 9.05 | -- | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 40 | 52.71 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 41 | 52.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 42 | 52.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 57 | 53.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 86 | 53.58 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 140 | 54.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 145 | 54.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 178 | 54.74 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 18 |
| 179 | 54.74 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 20 |
| 331 | 55.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 337 | 55.75 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 376 | 55.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 406 | 56.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 489 | 56.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 502 | 56.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 558 | 56.73 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 617 | 56.95 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 692 | 57.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 5 |
| 835 | 57.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 11 |